CT_cleanup: Import, clean up, and export multiple raw...

In dbarnas/mooreasgd: Organize and Analyze data for submarine groundwater discharge on coral reefs by the Silbiger Lab, CSUN

Import, clean up, and export multiple raw conductivity-temperature, CT, data files from the HOBO CT Logger

Description

This function loads all raw .csv files within the data.path folder. It removes the first row of each file containing logger information, then retains column headers. Unnecessary columns are removed, and the remaining columns are renamed as needed for simplicity and consistency. Any rows containing NA's are dropped.

Usage

CT_cleanup(
  data.path,
  output.path,
  path.pattern,
  tf.write = FALSE,
  tf.recursive = FALSE,
  hobo.cal = FALSE,
  cond.range = "high"
)

Arguments

data.path	Path to the input files
output.path	Path for the output files
path.pattern	Character string or object referencing a character string that identifies CT logger data within the specified file path
tf.write	Logical parameter indicating whether to save output files in an output folder. Default = FALSE.
tf.recursive	Logical parameter indicating whether to search within folders at the data.path. Default = FALSE
hobo.cal	Logical parameter indicating whether the .hobo file has been pre-calibrated using HOBOware software and exported as a processed .csv. Default = FALSE
cond.range	Character string or object indicating whether conductivity was recorded in High ("high"), Low ("low"), or both ("highlow") ranges. Default = "high"

Value

For every imported CT data file, one tidied file with temperature-compensated conductance is exported and returned

dbarnas/mooreasgd documentation built on Jan. 3, 2023, 7:10 a.m.