pH_cleanup: Clean up raw pH data file from the HOBO pH Logger

In dbarnas/mooreasgd: Organize and Analyze data for submarine groundwater discharge on coral reefs by the Silbiger Lab, CSUN

Clean up raw pH data file from the HOBO pH Logger

Description

This function loads a raw pH file. It searches a directory for the correct logger's serial number, plucks out the correct file or files and stacks all related files into one loaded csv. It removes the first two rows of each relevant file containing logger information, then retains column headers. Unnecessary columns are removed, and the remaining columns are renamed as needed for simplicity and consistency. Any rows containing NA's are dropped.

Usage

pH_cleanup(
  data.path,
  pH.serial,
  output.path,
  tf_write = FALSE,
  recursive_tf = FALSE
)

Arguments

data.path	Path to the input files
pH.serial	Logger serial number used in naming the input file
output.path	Path for the output files
tf_write	Logical parameter indicating whether to save output files in an output folder. Default = FALSE.
recursive_tf	Logical parameter indicating whether to search within folders at the file path. Default = FALSE
path.pattern	Character string or object referencing a character string that identifies pH logger data within the specified file path

Value

For every imported pH data file, one tidied file is exported and returned

dbarnas/mooreasgd documentation built on Jan. 3, 2023, 7:10 a.m.