Files in dbrookeUAB/dbsinglecell
Dewey Brooke's Single-Cell Toolkit
.DS_Store
.Rbuildignore
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/LogNormalize.R
R/RcppExports.R
R/better_umap.R
R/cellphonedb_utilities.R
R/cpdb.R
R/db_qc.R
R/db_read10x.R
R/hdbscan.R
R/message_utilities.R
R/methods.R
R/organize_10x.R
R/pacmap.R
R/plot_umap.R
R/plot_umap_density.R
R/quality_control.R
R/reticulate_helpers.R
R/seurat_utilities.R
R/sparse_utilities.R
README.md
_pkgdown.yml
data/cc.genes.rda
data/gn2ens.rda
data/mnist.rda
dbsinglecell.Rproj
docs/404.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/HDBSCAN.Seurat.html
docs/reference/HDBSCAN.default.html
docs/reference/HDBSCAN.html
docs/reference/HDBSCAN.matrix.html
docs/reference/NewMeta.html
docs/reference/PaCMAP.Seurat.html
docs/reference/PaCMAP.default.html
docs/reference/PaCMAP.html
docs/reference/PaCMAP.matrix.html
docs/reference/Rplot001.png
docs/reference/add_seurat_embedding.html
docs/reference/cellphonedb_summary.html
docs/reference/clustUMAP.html
docs/reference/create_seurat.html
docs/reference/db_count_genes.html
docs/reference/db_count_reads.html
docs/reference/db_counts.html
docs/reference/db_mtx_remove_empty.html
docs/reference/db_qc_cell.html
docs/reference/db_read10x.html
docs/reference/db_read10x_v2.html
docs/reference/db_read10x_v3.html
docs/reference/db_read10x_v4.html
docs/reference/db_read10x_v5.html
docs/reference/db_read10x_v6.html
docs/reference/db_read_alevin.html
docs/reference/db_read_mtx.html
docs/reference/db_singlecell-package.html
docs/reference/db_write10X.html
docs/reference/dbsc-class.html
docs/reference/dbsc2-class.html
docs/reference/flatMatrix_2_10x.html
docs/reference/gg_umap.html
docs/reference/hcl_umap.html
docs/reference/hue_umap.html
docs/reference/index.html
docs/reference/install_python_packages.html
docs/reference/monocle_processing.html
docs/reference/organize_10x.html
docs/reference/pal_ggplot.html
docs/reference/pal_hcl.html
docs/reference/pal_hue.html
docs/reference/pal_rainbow.html
docs/reference/pal_umap.html
docs/reference/pre_processing.html
docs/reference/print.db_sce.html
docs/reference/rbw_umap.html
docs/reference/rcpp_hello_world.html
docs/reference/read10x.html
docs/reference/read10x_atlas.html
docs/reference/show.db_sce.html
docs/reference/sparse2DT.Seurat.html
docs/reference/sparse2DT.html
docs/reference/umap.html
docs/reference/umapl.Seurat.html
docs/reference/umapl.html
docs/reference/umapl.matrix.html
docs/reference/uwot.Seurat.html
docs/reference/uwot.html
docs/reference/uwot.matrix.html
docs/reference/visUMAP.html
docs/sitemap.xml
man/HDBSCAN.Rd
man/HDBSCAN.Seurat.Rd
man/HDBSCAN.default.Rd
man/HDBSCAN.matrix.Rd
man/NewMeta.Rd
man/PaCMAP.Rd
man/PaCMAP.Seurat.Rd
man/PaCMAP.default.Rd
man/PaCMAP.matrix.Rd
man/add_seurat_embedding.Rd
man/cellphonedb_summary.Rd
man/create_seurat.Rd
man/db_count_genes.Rd
man/db_count_reads.Rd
man/db_counts.Rd
man/db_mtx_remove_empty.Rd
man/db_qc.Rd
man/db_qc_cell.Rd
man/db_read10x.Rd
man/db_read_alevin.Rd
man/db_read_mtx.Rd
man/db_singlecell-package.Rd
man/db_write10X.Rd
man/dot-onLoad.Rd
man/flatMatrix_2_10x.Rd
man/import_cpdb_results.Rd
man/install_python_packages.Rd
man/message_append.Rd
man/message_section.Rd
man/message_task.Rd
man/organize_10x.Rd
man/pal_ggplot.Rd
man/pal_hcl.Rd
man/pal_hue.Rd
man/pal_rainbow.Rd
man/pre_processing.Rd
man/print.db_sce.Rd
man/rcpp_hello_world.Rd
man/show.db_sce.Rd
man/sparse2DT.Rd
man/sparse2DT.Seurat.Rd
man/umapl.Rd
man/umapl.Seurat.Rd
man/umapl.matrix.Rd
man/uwot.Rd
man/uwot.Seurat.Rd
man/uwot.matrix.Rd
src/RcppExports.cpp
src/RcppExports.o
src/dbsinglecell.so
src/matrix_rollsum.cpp
src/matrix_rollsum.o
src/string_helpers.cpp
src/string_helpers.o
