db_read10x: Fast Import of 10X Data

In dbrookeUAB/dbsinglecell: Dewey Brooke's Single-Cell Toolkit

Fast Import of 10X Data

Description

Fast Import of 10X Data

Usage

db_read10x(
  path,
  return = "Seurat",
  gene_col = 2,
  barcode_col = 1,
  seurat_project = basename(path),
  QC = TRUE,
  trim_fat = FALSE,
  verbose = TRUE
)

Arguments

return	Set the format for the imported data. By default, 10X data is imported as a sparse matrix (return='sparse'), yet it can also return it as either a SingleCellExperiment (return='sce') or SeuratObject (⁠return='Seurat⁠).
gene_col	The column position to
trim_fat

dbrookeUAB/dbsinglecell documentation built on May 2, 2023, 12:49 a.m.