impute_ruv_reproduce: Reproduce RUV2, RUV3, and RUV4 with RUVimpute.

In dcgerard/vicar: Various Ideas for Confounder Adjustment in Regression

Description

This is a proof of concept function to integrate ruvimpute with RUV2, ruv3, RUV4.

Usage

impute_ruv_reproduce(Y21, Y31, Y32, k, impute_type = c("ruv2", "ruv3", "ruv4"))

Arguments

Y21	Top left of matrix.
Y31	Bottom left of matrix.
Y32	Top right of matrix.
k	The rank of the mean matrix.
impute_type	Which version of RUV should we reproduce? "ruv2", "ruv3", or "ruv4"?

Author(s)

David Gerard

References

• Gerard, David, and Matthew Stephens. 2021. "Unifying and Generalizing Methods for Removing Unwanted Variation Based on Negative Controls." Statistica Sinica, 31(3), 1145-1166. doi: 10.5705/ss.202018.0345

dcgerard/vicar documentation built on July 7, 2021, 1:08 p.m.