Files in ddeweerd/MODifieRDev
MODifieRDev
.Rbuildignore
.gitignore
DESCRIPTION
MODifieRDev.Rproj
MODifieRDev.md
MODifieRDev.pdf
NAMESPACE
R/.Rapp.history
R/MODA_functions.R
R/ModuleDiscovererDB.R
R/S2B.R
R/S2B_functions.R
R/clique_db.R
R/clique_sum_exact.R
R/clique_sum_permutation.R
R/correlation_clique.R
R/create_input.R
R/data.R
R/diamond.R
R/diffcoex.R
R/export.R
R/general_functions.R
R/mcode.R
R/mcode_algorithm.R
R/mcode_construction.R
R/moda.R
R/module_set.R
R/modulediscoverer.R
R/prepare_export.R
R/validators.R
R/wcgna.R
R/zzz.R
data/count_matrix.rda
data/expression_matrix.rda
data/ppi_network.rda
data/probe_annotation.rda
inst/DIAMOnD_MODifieR_rt.py
inst/db_cliques.py
man/.Rapp.history
man/S2B.Rd
man/build_clique_db.Rd
man/clique_sum_exact.Rd
man/clique_sum_permutation.Rd
man/correlation_adjust_cutoff.Rd
man/correlation_clique.Rd
man/correlation_set_module_size.Rd
man/count_matrix.Rd
man/create_custom_microarray_input_object.Rd
man/create_custom_rna_input_object.Rd
man/create_input_microarray.Rd
man/create_input_rnaseq.Rd
man/create_module_set.Rd
man/diamond.Rd
man/diamond_add_seed_genes.Rd
man/diamond_remove_seed_genes.Rd
man/diffcoex.Rd
man/diffcoex_split_module_by_color.Rd
man/entrez_to_symbol.Rd
man/expression_matrix.Rd
man/get_max_frequency.Rd
man/mod_mcode.Rd
man/moda.Rd
man/moda_change_specific_threshold.Rd
man/modulediscoverer.Rd
man/ppi_network.Rd
man/probe_annotation.Rd
man/recalculate_diff_genes.Rd
man/recalculate_expression.Rd
man/symbol_to_entrez.Rd
man/wgcna.Rd
man/wgcna_adjust_significance.Rd
man/wgcna_get_all_module_genes.Rd
man/wgcna_get_module_genes_by_sign.Rd
man/wgcna_set_module_size.Rd
man/wgcna_split_module_by_color.Rd
readme.md
src/MODifieRDev_init.c
src/Makevars
src/Makevars.win
src/complex.c
vignettes/MODifieRDev.Rmd
vignettes/MODifieR_bibliography.bib
vignettes/figures/consensus4.png
vignettes/figures/diamond.png
vignettes/figures/string4.jpg
