create_module_set: Consensus module
In ddeweerd/MODifieRDev: MODifieRDev

Description Usage Arguments Details Value Author(s)

Consensus module

1	create_module_set(min_frequency, module_list)

`min_frequency`	Minimal number of MODifieR modules that a gene should be present in in order to include it in the final module
`module_list`	A list of MODifieR modules

Get a consensus module that is composed of genes present in at least min_frequency genes. If the input module_list is unnamed, the subclasses of the MODifieR objects will be used. If there is more than 1 of a given subclass present in module_list, a number will be appended.

Returns an object of class "MODifieR_module" with subclass "Module_set". This object is a named list containing the following components:

`module_genes`	A character vector containing the genes in the final module
`module_gene_list`	A named list containing the module genes from the original modules
`gene_frequency`	Table containing all the genes present in the modules and their frequency
`method_by_gene`	A named list where the elements are the modules the genes have been found in and the names are the gene names
`gene_by_method`	A table containing the gene frequencies by combination of methods
`settings`	A named list containing the parameters used in generating the object