Description Usage Arguments Details Value Author(s)
Consensus module
1 | create_module_set(min_frequency, module_list)
|
min_frequency |
Minimal number of MODifieR modules that a gene should be present in in order to include it in the final module |
module_list |
A list of MODifieR modules |
Get a consensus module that is composed of genes present in at least min_frequency
genes.
If the input module_list
is unnamed, the subclasses of the MODifieR objects will be used.
If there is more than 1 of a given subclass present in module_list
, a number will be appended.
Returns an object of class "MODifieR_module" with subclass "Module_set". This object is a named list containing the following components:
module_genes |
A character vector containing the genes in the final module |
module_gene_list |
A named list containing the module genes from the original modules |
gene_frequency |
Table containing all the genes present in the modules and their frequency |
method_by_gene |
A named list where the elements are the modules the genes have been found in and the names are the gene names |
gene_by_method |
A table containing the gene frequencies by combination of methods |
settings |
A named list containing the parameters used in generating the object |
Dirk de Weerd
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