plot_heatmap: plot_heatmap

In ddiez/omisc: Miscelaneous Tools for the Analysis of Omics Data

plot_heatmap

Description

plot_heatmap

Usage

plot_heatmap(x, ...)

## S3 method for class 'DGEList'
plot_heatmap(
  x,
  log = TRUE,
  batch = NULL,
  design = NULL,
  symbol.col = "SYMBOL",
  keep.ids = FALSE,
  top_ann = NULL,
  top_ann_col = NULL,
  show_ann_legend = TRUE,
  ...
)

## S3 method for class 'matrix'
plot_heatmap(x, scale = TRUE, show_column_names = TRUE, ...)

Arguments

x	object to plot.
...
log	whether to use log CPMs.
batch	batch variable for removeBatchEffect.
design	design matrix for removeBatchEffect.
symbol.col	column name with gene symbols.
keep.ids	whether to keep original feature ids.
top_ann	names of columns to be used as top annotations.
top_ann_col	color definition for the categories in the top annotations.
show_ann_legend	whether to show the annotation legends.
show_column_names	whether to show column names (default: TRUE).

ddiez/omisc documentation built on Aug. 14, 2024, 1:19 p.m.