plot_volcano: plot_volcano

In ddiez/omisc: Miscelaneous Tools for the Analysis of Omics Data

plot_volcano

Description

Volcano plot from various types of objects.

Usage

plot_volcano(x, ...)

## S3 method for class 'MArrayLM'
plot_volcano(
  x,
  coef = 1,
  top_genes = NULL,
  lfc = 1,
  fdr = 0.01,
  use.column = "symbol",
  color.by = NULL
)

## S3 method for class 'DGEList'
plot_correlation(x, log = TRUE, ...)

Arguments

x	an R object.
...	arguments passed down to methods.
coef	name of the coefficient.
top_genes	number of genes to highlight.
lfc	logFC cutoff for top genes.
fdr	FDR cutoff for top genes.
use.column	column containing gene names (default: symbol).
color.by	column to color points.

ddiez/omisc documentation built on Aug. 14, 2024, 1:19 p.m.