tbl_strata: Stratified gtsummary tables

In ddsjoberg/gtsummary: Presentation-Ready Data Summary and Analytic Result Tables

Stratified gtsummary tables

Description

\lifecycle

maturing
Build a stratified gtsummary table. Any gtsummary table that accepts a data frame as its first argument can be stratified.

• In tbl_strata(), the stratified or subset data frame is passed to the function in ⁠.tbl_fun=⁠, e.g. purrr::map(data, .tbl_fun).

• In tbl_strata2(), both the stratified data frame and the strata level are passed to ⁠.tbl_fun=⁠, e.g. purrr::map2(data, strata, .tbl_fun)

Usage

tbl_strata(
  data,
  strata,
  .tbl_fun,
  ...,
  .sep = ", ",
  .combine_with = c("tbl_merge", "tbl_stack"),
  .combine_args = NULL,
  .header = ifelse(.combine_with == "tbl_merge", "**{strata}**", "{strata}"),
  .stack_group_header = NULL,
  .quiet = NULL
)

tbl_strata2(
  data,
  strata,
  .tbl_fun,
  ...,
  .sep = ", ",
  .combine_with = c("tbl_merge", "tbl_stack"),
  .combine_args = NULL,
  .header = ifelse(.combine_with == "tbl_merge", "**{strata}**", "{strata}"),
  .stack_group_header = NULL,
  .quiet = TRUE
)

Arguments

data	(data.frame, survey.design) a data frame or survey object
strata	(tidy-select) character vector or tidy-selector of columns in data to stratify results by
.tbl_fun	(function) A function or formula. If a function, it is used as is. If a formula, e.g. ~ .x %>% tbl_summary() %>% add_p(), it is converted to a function. The stratified data frame is passed to this function.
...	Additional arguments passed on to the .tbl_fun function.
.sep	(string) when more than one stratifying variable is passed, this string is used to separate the levels in the spanning header. Default is ", "
.combine_with	(string) One of c("tbl_merge", "tbl_stack"). Names the function used to combine the stratified tables.
.combine_args	(named list) named list of arguments that are passed to function specified in .combine_with
.header	(string) String indicating the headers that will be placed. Default is "**{strata}**" when .combine_with = "tbl_merge" and "{strata}" when .combine_with = "tbl_stack". Items placed in curly brackets will be evaluated according to glue::glue() syntax. - strata stratum levels - n N within stratum - N Overall N The evaluated value of .header is also available within tbl_strata2(.tbl_fun)
.stack_group_header
.quiet

Tips

• tbl_summary()

  • The number of digits continuous variables are rounded to is determined separately within each stratum of the data frame. Set the ⁠digits=⁠ argument to ensure continuous variables are rounded to the same number of decimal places.

  • If some levels of a categorical variable are unobserved within a stratum, convert the variable to a factor to ensure all levels appear in each stratum's summary table.

Author(s)

Daniel D. Sjoberg

Examples

# Example 1 ----------------------------------
trial |>
  select(age, grade, stage, trt) |>
  mutate(grade = paste("Grade", grade)) |>
  tbl_strata(
    strata = grade,
    .tbl_fun =
      ~ .x |>
        tbl_summary(by = trt, missing = "no") |>
        add_n(),
    .header = "**{strata}**, N = {n}"
  )

# Example 2 ----------------------------------
trial |>
  select(grade, response) |>
  mutate(grade = paste("Grade", grade)) |>
  tbl_strata2(
    strata = grade,
    .tbl_fun =
      ~ .x %>%
        tbl_summary(
          label = list(response = .y),
          missing = "no",
          statistic = response ~ "{p}%"
        ) |>
        add_ci(pattern = "{stat} ({ci})") |>
        modify_header(stat_0 = "**Rate (95% CI)**") |>
        modify_footnote(stat_0 = NA),
    .combine_with = "tbl_stack",
    .combine_args = list(group_header = NULL),
    .quiet = TRUE
  ) |>
  modify_caption("**Response Rate by Grade**")

ddsjoberg/gtsummary documentation built on Sept. 16, 2024, 4:15 a.m.