theme_gtsummary | R Documentation |
maturing
The following themes are available to use within the gtsummary package.
Print theme elements with theme_gtsummary_journal(set_theme = FALSE) %>% print()
.
Review the themes vignette
for details.
theme_gtsummary_journal(
journal = c("jama", "lancet", "nejm", "qjecon"),
set_theme = TRUE
)
theme_gtsummary_compact(set_theme = TRUE, font_size = NULL)
theme_gtsummary_printer(
print_engine = c("gt", "kable", "kable_extra", "flextable", "huxtable", "tibble"),
set_theme = TRUE
)
theme_gtsummary_language(
language = c("de", "en", "es", "fr", "gu", "hi", "is", "ja", "kr", "mr", "nl", "no",
"pt", "se", "zh-cn", "zh-tw"),
decimal.mark = NULL,
big.mark = NULL,
iqr.sep = NULL,
ci.sep = NULL,
set_theme = TRUE
)
theme_gtsummary_continuous2(
statistic = "{median} ({p25, {p75})",
set_theme = TRUE
)
theme_gtsummary_mean_sd(set_theme = TRUE)
theme_gtsummary_eda(set_theme = TRUE)
journal |
String indicating the journal theme to follow. One of
|
set_theme |
Logical indicating whether to set the theme. Default is |
font_size |
Numeric font size for compact theme. Default is 13 for gt tables, and 8 for all other output types |
print_engine |
String indicating the print method. Must be one of
|
language |
String indicating language. Must be one of If a language is missing a translation for a word or phrase, please feel free to reach out on GitHub with the translated text! |
decimal.mark |
The character to be used to indicate the numeric decimal point.
Default is |
big.mark |
Character used between every 3 digits to separate
hundreds/thousands/millions/etc.
Default is |
iqr.sep |
string indicating separator for the default IQR in |
ci.sep |
string indicating separator for confidence intervals.
If |
statistic |
Default statistic continuous variables |
theme_gtsummary_journal(journal=)
"jama"
The Journal of the American Medical Association
Round large p-values to 2 decimal places; separate confidence intervals with "ll to ul"
.
tbl_summary()
Doesn't show percent symbol; use em-dash to separate IQR; run add_stat_label()
tbl_regression()
/tbl_uvregression()
show coefficient and CI in same column
"lancet"
The Lancet
Use mid-point as decimal separator; round large p-values to 2 decimal places; separate confidence intervals with "ll to ul"
.
tbl_summary()
Doesn't show percent symbol; use em-dash to separate IQR
"nejm"
The New England Journal of Medicine
Round large p-values to 2 decimal places; separate confidence intervals with "ll to ul"
.
tbl_summary()
Doesn't show percent symbol; use em-dash to separate IQR
"qjecon"
The Quarterly Journal of Economics
tbl_summary()
all percentages rounded to one decimal place
tbl_regression()
/tbl_uvregression()
add significance stars with add_significance_stars()
; hides CI and p-value from output
theme_gtsummary_compact()
tables printed with gt, flextable, kableExtra, or huxtable will be compact with smaller font size and reduced cell padding
theme_gtsummary_printer(print_engine=)
Use this theme to permanently change the default printer.
theme_gtsummary_continuous2()
Set all continuous variables to summary type "continuous2"
by default
theme_gtsummary_mean_sd()
Set default summary statistics to mean and standard deviation in tbl_summary()
Set default continuous tests in add_p()
to t-test and ANOVA
theme_gtsummary_eda()
Set all continuous variables to summary type "continuous2"
by default
In tbl_summary()
show the median, mean, IQR, SD, and Range by default
Use reset_gtsummary_theme()
to restore the default settings
Review the themes vignette to create your own themes.
Example
set_gtsummary_theme()
, reset_gtsummary_theme()
# Setting JAMA theme for gtsummary
theme_gtsummary_journal("jama")
# Themes can be combined by including more than one
theme_gtsummary_compact()
set_gtsummary_theme_ex1 <-
trial %>%
select(age, grade, trt) %>%
tbl_summary(by = trt) %>%
as_gt()
# reset gtsummary themes
reset_gtsummary_theme()
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