Files in decusInLabore/biologicSeqTools
Seq Analysis Helper Functions
.Rbuildignore
.Rhistory
.Rprofile
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/SBwebtools.pckg.r
README.md
biologicSeqTools.Rproj
man/DGEanalysis.Rd
man/DotPlotSB.Rd
man/LRTanalysis.Rd
man/add.category.to.lab.reference.table.hs.Rd
man/add2labCatSelectionDBtable.Rd
man/add2vec.Rd
man/addCoVar.Rd
man/addDGEcomparisons2DesignFile.Rd
man/addGeneAnnotation.Rd
man/addProject2ProjectTable.Rd
man/addTPMorFPKMtable.Rd
man/assignDbUsersAndPrivileges.Rd
man/bioLOGIC-class.Rd
man/completeDesignBasedOnSampleID.Rd
man/create.GSEA.table.Rd
man/create.gmt.file.from.ref.data.table.Rd
man/create.gsea.rnk.files.Rd
man/create.rnaseqc.script.Rd
man/create.timecourse.cat.lines.Rd
man/create.tpm.and.fpkm.tables.Rd
man/create.website.parameters.Rd
man/createAlignmentShellScript.Rd
man/createAnalysisFolders.Rd
man/createAndFormatExcelOutputFiles.Rd
man/createConcatenateFASTQfilesShellScript.Rd
man/createDdsObject.Rd
man/createDesignFileCrickASFsamples.Rd
man/createExcelWorkbook.Rd
man/createNewProject.Rd
man/createPCAloadingPlots.Rd
man/createRMDscript.Rd
man/createRNAseqQCscript.Rd
man/createSRAdownloadScript.Rd
man/createSRRdownloadScript.Rd
man/createSampleDendrogram.Rd
man/createSettingsFile.Rd
man/createSettingsJSON.Rd
man/createSeuratSettingsFile.Rd
man/createTrimGaloreShellScript.Rd
man/createbulkRNASeqAnalysisBashScripts.Rd
man/datatable.to.website.ptm.Rd
man/dbcat2gmt.Rd
man/do.differential.expression.analyis.Rd
man/doDGEanalysis.Rd
man/doLRTanalysis.Rd
man/doLinearFittings.Rd
man/doPCA.Rd
man/doQuery.Rd
man/excel.Rd
man/hpcClusterSubmisison.Rd
man/import.db.table.from.db.Rd
man/inferDBcategories.Rd
man/killDbConnections.Rd
man/list.db.table.col.names.Rd
man/list.db.tables.in.db.Rd
man/listExistingProjects.Rd
man/make.hm.Rd
man/msigdb.gmt2refDB.Rd
man/organizeFastqFiles.Rd
man/prepareRSEMcountMatrix.Rd
man/profileCluster.Rd
man/readAndPrepareCountMatrix.Rd
man/retrieve.gene.category.from.db.Rd
man/selectHeatmapGenes.Rd
man/setAnalysisPaths.Rd
man/setCrickGenomeAndGeneNameTable.Rd
man/setDataBaseParameters.Rd
man/setMountingPoint.Rd
man/upload.datatable.to.database.Rd
man/upload.pca.table.to.db.Rd
man/uploadDbTableInfile.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
