msigdb.gmt2refDB: msigdb.gmt2refDB

In decusInLabore/biologicSeqTools: Seq Analysis Helper Functions

Description

Method description

Usage

msigdb.gmt2refDB(
  df.gmt = "read.delim(gmt.file, header=FALSE, sep = '\t', stringsAsFactors = FALSE)",
  host = "www.biologic-db.org",
  db.user = "boeings",
  pwd = "pwd",
  ref.db = "reference_database",
  ref.db.table = "reference database table name",
  cat_type = "mysigdb_c5",
  data_source = "Broad Institute",
  keep.gene.values = FALSE,
  gene.id = "hgnc_symbol",
  create.new.table = FALSE,
  mm.hs.conversion.file = "C:/Users/boeing01/Desktop/homologene.data"
)

Arguments

agree

TBD

decusInLabore/biologicSeqTools documentation built on Jan. 28, 2022, 12:23 p.m.