all.msigdb.gene.sets: All of the Gene Set Collections from the Broad Institutes...
In definitelysean/sgaphd: Sean Gets A PhD: Research Convenience Functions
Description
Usage
Format
Source
Description
A collated version of all the gene set collections created by the Broad Institute.
Generated by downloading the Entrez .gmt's for each gene set, parsing them with
roller, and concatenating them al together.
Useful for GSEA and GSVA shotguns!
Usage
1
Format
A list with 8 elements, whi:
- C1
C1 Collection Gene Sets
- C2
C2 Collection Gene Sets
- C3
C3 Collection Gene Sets
- C4
C4 Collection Gene Sets
- C5
C5 Collection Gene Sets
- C6
C6 Collection Gene Sets
- C7
C7 Collection Gene Sets
- Hallmark
Hallmark Collection Gene Sets
Source
http://software.broadinstitute.org/gsea/msigdb/
definitelysean/sgaphd documentation built on May 15, 2019, 3:20 a.m.
R Package Documentation
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Description Usage Format Source
Description
A collated version of all the gene set collections created by the Broad Institute. Generated by downloading the Entrez .gmt's for each gene set, parsing them with roller, and concatenating them al together. Useful for GSEA and GSVA shotguns!
Usage
1 |
Format
A list with 8 elements, whi:
- C1
C1 Collection Gene Sets
- C2
C2 Collection Gene Sets
- C3
C3 Collection Gene Sets
- C4
C4 Collection Gene Sets
- C5
C5 Collection Gene Sets
- C6
C6 Collection Gene Sets
- C7
C7 Collection Gene Sets
- Hallmark
Hallmark Collection Gene Sets
Source
http://software.broadinstitute.org/gsea/msigdb/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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