get_msigdb_gene_set: Search MSigDB For a Given Gene Set
In definitelysean/sgaphd: Sean Gets A PhD: Research Convenience Functions
Description
Usage
Arguments
Value
Description
This is a convenience function to look through the MSigDB gene set collections (C1-C7 and Hallmark) for a gene set
with a known name, and to return the Entrez gene IDs associated with that gene set. Pretty simple!
Usage
1
get_msigdb_gene_set(gene.set.name)
Arguments
gene.set.name
The name (in whole, or part!) of the gene set for which to find gene IDs
Value
The MSigDB gene set's Entrez IDs, as a character vector. Or, a list of gene sets, if there were multiple matches. The leading part of each result gene set (the portion before the '.') indicates which gene set collection the gene set was found in.
definitelysean/sgaphd documentation built on May 15, 2019, 3:20 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
This is a convenience function to look through the MSigDB gene set collections (C1-C7 and Hallmark) for a gene set with a known name, and to return the Entrez gene IDs associated with that gene set. Pretty simple!
Usage
1 | get_msigdb_gene_set(gene.set.name)
|
Arguments
gene.set.name |
The name (in whole, or part!) of the gene set for which to find gene IDs |
Value
The MSigDB gene set's Entrez IDs, as a character vector. Or, a list of gene sets, if there were multiple matches. The leading part of each result gene set (the portion before the '.') indicates which gene set collection the gene set was found in.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.