getGeneRegionById-GvizManager-method: getGeneRegionById-methods

In demuellae/muGvizAnnotation: muGvizAnnotation

Description

Retrieve the coordinates of a gene given the gene identifier

Usage

## S4 method for signature 'GvizManager'
getGeneRegionById(object, id, offsetUp = 0.1,
  offsetDown = 0.1, type = "ensembl")

Arguments

object	GvizManager object
id	character specifying the gene id for which coordinates should be retrieved
offsetUp	offset for retrieving a flanking region upstream of the gene. Can be an integer (e.g. 5L) for the absolute number of bases or a double that specifies the relative length of the gene
offsetDown	offset for retrieving a flanking region downstream of the gene. Can be an integer (e.g. 5L) for the absolute number of bases or a double that specifies the relative length of the gene
type	type of identifier. currently only 'ensembl' and 'ensembl_long' are supported

Value

a GRanges object containing the gene coordinates

Author(s)

Fabian Mueller

demuellae/muGvizAnnotation documentation built on May 30, 2019, 2:09 p.m.