responseplot.occu: plot the response of an occupancy model to the change of...

In derek-corcoran-barrios/DiversityOccu: Building Diversity Models from Multiple Species Occupancy Models

Description

This function takes a batchoccupancy object and one of the variables used to predict occupacy, and makes a plot showing the response of occupancyt against the selected variable. This function automatically limits the values of that variable to the maximum and minimum values of the dataset.

Usage

responseplot.occu(batch, spp, variable, N = 50)

Arguments

batch	A result from the batchoccu function.
spp	The species number of which response is going to be ploted.
variable	The variable of which the response is to be ploted.
N	The number of points used to make the plot (default is 20) the greater the number, the clearer will be the response, but it will make the plot slower

Value

a ggplot object plotting the alpha diversity response to the selected variable.

Author(s)

Derek Corcoran <[e-mail]>

See Also

batchoccu

Examples

## Not run: 
data("IslandBirds")
data("Daily_Cov")
data("siteCov")
BirdOccupancy <-batchoccu(pres = IslandBirds, sitecov = siteCov, obscov =
Daily_Cov, spp = 5, form = ~ Day + Wind + Noise + Clouds ~
Elev + AgroFo + SecVec + Wetland)
#plot the response of occupancy to individual variables for species 4 and 5

responseplot.occu(batch = BirdOccupancy, spp = 4, variable = "Elev")


responseplot.occu(batch = BirdOccupancy, spp = 5, variable = "Elev")

## End(Not run)

derek-corcoran-barrios/DiversityOccu documentation built on Nov. 12, 2019, 7:31 p.m.