Man pages for dereksonderegger/PepSeq
Tools for analyzing Peptide Sequencing results
| background_rate | Calculate the background rate in a sequence |
| changePoint | Find Variance Change Point |
| Est_GammaPoisson | Calculate MLE Estimates for Gamma-Poisson distribution |
| fisher_chi_sq | Perform Fisher's Chi-squared test on each peptide sequence |
| full_standardize | Standardize the cleaved and uncleaved as well as create the... |
| identify_peaks | Identify Peaks |
| identify_peaks2 | Multivariate standardization using Cleaved/Uncleaved... |
| identify_peaks_aux | Identify Peaks |
| Identify_Peptide_Peaks | Calculates a set of Peaks |
| import_pulldown | Reads an input pulldown .csv file and organizes it for... |
| import_pulldown_metadata | Import the pulldown metadata |
| merge_peaks | Given a data frame of peaks, merge peaks that are close... |
| Overlapping_Peaks | Calculate Overlapping Peaks |
| plot_pulldown | Create a scatterplot representing a pull-down |
| plot_pulldown_Shiny | Create a Shiny application showing a scatterplot representing... |
| shrink | Remove some percentage or number of observations. |
| standardize | Standardize counts relative to uncleaved counts. |
