Files in dereksonderegger/PepSeq

Tools for analyzing Peptide Sequencing results

.Rbuildignore

.Rproj.user/E8463D48/build_options

.Rproj.user/E8463D48/console06/INDEX001

.Rproj.user/E8463D48/cpp-definition-cache

.Rproj.user/E8463D48/pcs/debug-breakpoints.pper

.Rproj.user/E8463D48/pcs/files-pane.pper

.Rproj.user/E8463D48/pcs/packages-pane.pper

.Rproj.user/E8463D48/pcs/source-pane.pper

.Rproj.user/E8463D48/pcs/windowlayoutstate.pper

.Rproj.user/E8463D48/pcs/workbench-pane.pper

.Rproj.user/E8463D48/persistent-state

.Rproj.user/E8463D48/rmd-outputs

.Rproj.user/E8463D48/saved_source_markers

.Rproj.user/E8463D48/sources/prop/1F3FD9C3

.Rproj.user/E8463D48/sources/prop/20F8BE4A

.Rproj.user/E8463D48/sources/prop/381DBAFC

.Rproj.user/E8463D48/sources/prop/6CABA07A

.Rproj.user/E8463D48/sources/prop/6CCB8B8F

.Rproj.user/E8463D48/sources/prop/BB829B4B

.Rproj.user/E8463D48/sources/prop/D0A5C646

.Rproj.user/E8463D48/sources/prop/E3E50F1D

.Rproj.user/E8463D48/sources/prop/F30B7715

.Rproj.user/E8463D48/sources/prop/INDEX

.Rproj.user/shared/notebooks/11B769AD-Pulldown Visualization/1/s/chunks.json

.Rproj.user/shared/notebooks/9935A051-Analysis/1/E8463D482235BF74/chunks.json

.Rproj.user/shared/notebooks/9935A051-Analysis/1/s/chunks.json

.Rproj.user/shared/notebooks/9FC704F-Analysis/1/s/chunks.json

.Rproj.user/shared/notebooks/patch-chunk-names

.Rproj.user/shared/notebooks/paths

.gitignore

DESCRIPTION

NAMESPACE

PepSeq.Rproj

R/Backgroud_Rate.R R/Distribution_Estimation.R R/Helpers.R R/Identify_Peaks.R R/Identify_Peptide_Peaks.R R/Merge_Peaks.R R/Overlapping_Peaks.R R/Pulldown_Import.R R/Pulldown_Import_Metadata.R R/Pulldown_Visualization.R R/Pulldown_Visualization_Shiny.R R/Standardization.R R/Variance_Threshold.R

data-raw/2019_05_10_Pulldown.csv

data-raw/2019_06_25_Pulldown.csv

docs/Peak_Detection_Introduction.Rmd

docs/Peak_Detection_Introduction.docx

docs/Testing.R docs/pepseq-introduction.Rmd

docs/pepseq-introduction.docx

inst/extdata/2019_05_10_Pulldown.csv

inst/extdata/2019_06_25_Pulldown.csv

inst/extdata/Counts.pdf

inst/extdata/PepSeq_vs_NN.csv

inst/extdata/PepSeq_vs_NN.pdf

inst/extdata/counts_annotated.csv

inst/extdata/counts_annotated_PTX_short.csv

inst/extdata/example_counts.csv

inst/extdata/pulldown.pdf man/Est_GammaPoisson.Rd man/Identify_Peptide_Peaks.Rd man/Overlapping_Peaks.Rd man/background_rate.Rd man/changePoint.Rd man/fisher_chi_sq.Rd man/full_standardize.Rd man/identify_peaks.Rd man/identify_peaks2.Rd man/identify_peaks_aux.Rd man/import_pulldown.Rd man/import_pulldown_metadata.Rd man/merge_peaks.Rd man/plot_pulldown.Rd man/plot_pulldown_Shiny.Rd man/shrink.Rd man/standardize.Rd

vignettes/.gitignore

vignettes/Counts.pdf vignettes/pepseq-introduction.Rmd

dereksonderegger/PepSeq documentation built on July 24, 2019, 12:57 a.m.