Files in deruncie/MegaLMM
MegaLMM
.DS_Store
.Rbuildignore
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
MegaLMM.Rproj
Meta/Proposal-to-distribute-copyright-protected-work-2.docx
Meta/vignette.rds
NAMESPACE
R/MegaLMM_base_samplers.R
R/MegaLMM_functions.R
R/MegaLMM_master.R
R/MegaLMM_misc.R
R/RcppExports.R
R/Utilities.R
R/data.R
R/generate_simulations_halfSib.R
R/helper_functions.R
R/new_MegaLMM_setup.R
R/new_sampler_functions.R
R/observation_models.R
R/plot_Posterior.R
R/sample_B_prec.R
R/sample_Lambda_prec.R
R/sample_QTL_prec.R
R/sample_latent_traits.R
README.md
data/K.rda
data/yield_data.rda
doc/Running_MegaLMM.R
doc/Running_MegaLMM.Rmd
doc/Running_MegaLMM.html
man/Image.Rd
man/K.Rd
man/MegaLMM_control.Rd
man/MegaLMM_priors.Rd
man/SingleSite_regression_sampler_parallel.Rd
man/bs_binomial_model.Rd
man/bs_diff.Rd
man/cis_eQTL_model.Rd
man/clear_Posterior.Rd
man/combined_model.Rd
man/create_data_matrices.Rd
man/estimate_memory_initialization_MegaLMM.Rd
man/estimate_memory_posterior.Rd
man/find_candidate_states.Rd
man/get_posterior_FUN.Rd
man/get_posterior_HPDinterval.Rd
man/get_posterior_mean.Rd
man/grapes-times-times-grapes.Rd
man/initialize_MegaLMM.Rd
man/initialize_variables_MegaLMM.Rd
man/load_posterior_param.Rd
man/load_posterior_param_old.Rd
man/matrix_multiply_toDense.Rd
man/missing_data_model.Rd
man/plot.MegaLMM_state.Rd
man/plot_diagnostics.Rd
man/print.MegaLMM_state.Rd
man/regression_model.Rd
man/regression_sampler_parallel.Rd
man/reload_Posterior.Rd
man/reorder_factors.Rd
man/rstdnorm_mat.Rd
man/sample_MegaLMM.Rd
man/save_posterior_chunk.Rd
man/save_posterior_sample.Rd
man/set_priors_MegaLMM.Rd
man/setup_model_MegaLMM.Rd
man/summary.MegaLMM_state.Rd
man/toDense.Rd
man/traceplot_array.Rd
man/voom_model.Rd
man/yield_data.Rd
misc/Conceptual_model_v4.pdf
misc/Conceptual_model_v4.png
misc/CoverArt.jpg
misc/CoverArt.pdf
misc/CoverArt.png
misc/MultiEnvironmentTrial_G2.Rmd
misc/Running_MegaLMM_testing.Rmd
misc/testing_new_model.R
src/Makevars
src/Makevars.win
src/MegaBayesC_functions-d67a7275.o.tmp
src/MegaBayesC_functions.cpp
src/MegaLMM_types.h
src/Pre_calculations.cpp
src/RMatrix.cpp
src/RcppExports.cpp
src/Utilities.cpp
src/general_MegaLMM_functions.cpp
src/init.c
src/other_sampler_functions.cpp
src/regression_sampler.cpp
src/test.cpp
vignettes/.gitignore
vignettes/MultiEnvironmentTrial.Rmd
vignettes/Running_MegaLMM.Rmd
vignettes/Running_MegaLMM.nb.html
