Man pages for devonjkohler/MSstatsPTM
Statistical Characterization of Post-translational Modifications
| annotSite | Annotate modification site |
| dataProcessPlotsPTM | Visualization for explanatory data analysis |
| dataSummarizationPTM | Process MS PTM and global protein data |
| dataSummarizationPTM_TMT | Process MS PTM and global protein data produced via tandem... |
| groupComparisonPlotsPTM | Visualization for model-based analysis and summarization |
| groupComparisonPTM | Model PTM and/or protein data and make adjustments if needed |
| locateMod | Locate modified sites with a peptide |
| locatePTM | Annotate modified sites with associated peptides |
| MaxQtoMSstatsPTMFormat | Convert output of TMT labeled MaxQuant experiment into... |
| MSstatsPTM | MSstatsPTM: A package for detecting differencially abundant... |
| ProgenesistoMSstatsPTMFormat | Converts non-TMT Progenesis output into the format needed for... |
| raw.input | Example of input PTM dataset for LabelFree/DDA/DIA... |
| raw.input.tmt | Example of input PTM dataset for TMT experiments. |
| SpectronauttoMSstatsPTMFormat | Converts raw PTM MS data from Spectronautt into the format... |
| summary.data | Example of output from dataSummarizationPTM function for... |
| summary.data.tmt | Example of output from dataSummarizationPTM_TMT function for... |
| tidyFasta | Read and tidy a FASTA file |
