raw.input: Example of input PTM dataset for LabelFree/DDA/DIA...

In devonjkohler/MSstatsPTM: Statistical Characterization of Post-translational Modifications

Description

It can be the output of MSstatsPTM converter ProgenesistoMSstatsPTMFormat or other MSstats converter functions (Please see MSstatsPTM_LabelFree_Workflow vignette). The dataset is formatted as a list with two data.tables named PTM and PROTEIN. In each data.table the variables are as follows:

Usage

raw.input

Format

A list of two data.tables named PTM and PROTEIN with 1745 and 478 rows respectively.

Details

#'

• ProteinName : Name of protein with modification site mapped in with an underscore. ie "Protein_4_Y474"

• PeptideSequence

• Condition : Condition (ex. Healthy, Cancer, Time0)

• BioReplicate : Unique ID for biological subject.

• Run : MS run ID.

• Intensity

• PrecursorCharge

• FragmentIon

• ProductCharge

• IsotopeLabelType

Examples

head(raw.input$PTM)
head(raw.input$PROTEIN)

devonjkohler/MSstatsPTM documentation built on Dec. 19, 2021, 11:01 p.m.