API for devradiumking/maxabpp
Visualization of MaxQuant output for activity-based protein profiling experiments
| Global functions | |
|---|---|
| .PlotFace.TissueDrawing | Source code |
| .PlotFaceNames.TissueDrawing | Source code |
| .PlotFaces.TissueDrawing | Source code |
| .PlotSetBoundaries.TissueDrawing | Source code |
| .SplitFaceAtintersections | Source code |
| .VDPlotArcs | Source code |
| .Venn.2.weighted.distance | Source code |
| .WeightUniverse | Source code |
| .WeightVisible | Source code |
| .add.intersection.points | Source code |
| .addIntersectingFace | Source code |
| .addNonintersectingFace | Source code |
| .addSetWithExistingEdges | Source code |
| .check.clashes | Source code |
| .check.duplicate.edges | Source code |
| .circle.SetLabelPositions | Source code |
| .create.edge.joining.faces | Source code |
| .default.FaceLabelPositions | Source code |
| .default.SetLabelPositions | Source code |
| .det2 | Source code |
| .edge.in.Drawing | Source code |
| .face.area | Source code |
| .face.centroid | Source code |
| .face.maxradius | Source code |
| .face.midplace | Source code |
| .face.to.faceEdges | Source code |
| .face.toxy | Source code |
| .faceEdgeClasses | Source code |
| .faceEdgeNames | Source code |
| .faceNames | Source code |
| .faceSignatures | Source code |
| .find.duplicate.point | Source code |
| .find.face.containing.edge | Source code |
| .find.linear.circle.intersection | Source code |
| .find.linear.intersection | Source code |
| .find.linear.linear.intersection | Source code |
| .find.point.in.diagram | Source code |
| .find.point.in.nodelist | Source code |
| .find.point.on.EdgeLines | Source code |
| .find.point.on.face | Source code |
| .find.point.within.face | Source code |
| .find.sector.sector.intersection | Source code |
| .find.triangle.within.face | Source code |
| .findIntersection | Source code |
| .internal.edge.drawing.intersection | Source code |
| .is.face.within.set | Source code |
| .is.point.within.face | Source code |
| .join.arcs | Source code |
| .join.lines | Source code |
| .merge.faces.invisibly.split | Source code |
| .node.distance | Source code |
| .node.number.unused | Source code |
| .nodes.identical | Source code |
| .normalise.sector | Source code |
| .pairwise.overlaps | Source code |
| .point.xy.to.theta | Source code |
| .points.of.face | Source code |
| .polygon.area | Source code |
| .polygon.centroid | Source code |
| .probe.chord.intersections | Source code |
| .removeDuplicates | Source code |
| .rename.edge | Source code |
| .square.universe | Source code |
| .startFaceAtPoint | Source code |
| .theta.to.point.xy | Source code |
| .try.merge.faces.invisibly.split | Source code |
| .twoCircleIntersectionPointsObsolete | Source code |
| .validateDrawing | Source code |
| .validateFaces | Source code |
| CreateViewport | Source code |
| FaceColours | Source code |
| FaceTextColours | Source code |
| Indicator | Source code |
| Max_Venn | Man page Source code |
| NumberOfSets | Source code |
| PlotDarkMatter | Source code |
| PlotIntersectionText | Source code |
| PlotSetLabels | Source code |
| PlotVennGeometry | Source code |
| SetColours | Source code |
| SetTextColours | Source code |
| ThreeCircles | Source code |
| TwoCircles | Source code |
| UpViewports | Source code |
| VennFromSets_group | Source code |
| VennFromSets_individual | Source code |
| VennSetNames | Source code |
| VennSignature | Source code |
| VennThemes | Source code |
| Weights | Source code |
| addFace | Source code |
| addSetToDrawing | Source code |
| append_ec_sites | Man page Source code |
| compute.C2 | Source code |
| compute.C3 | Source code |
| compute.E4 | Source code |
| counts2list | Source code |
| dark.matter.signature | Source code |
| deleteFace | Source code |
| df2matrix | Source code |
| elemental_mod_subset | Man page |
| faceAreas | Source code |
| fequal | Source code |
| getEdge | Source code |
| getFace | Source code |
| injectEdge | Source code |
| injectPoint | Source code |
| injectPoints | Source code |
| internalPointsofFaces | Source code |
| intersect | Source code |
| intersection | Source code |
| joinEdgesInDrawing | Source code |
| list2df | Source code |
| list_df2df | Source code |
| list_vect2df | Source code |
| make.E4 | Source code |
| make_custom_setList | Man page |
| make_geneNames_setList | Man page |
| make_majorityproteinIDs_setList | Man page |
| make_proteinGroups_setList | Man page |
| make_proteinNames_setList | Man page |
| make_tiers | Man page Source code |
| make_tiers2 | Man page Source code |
| makevp.eqsc | Source code |
| matrix2df | Source code |
| matrix2long | Source code |
| mgrepl | Man page Source code |
| multi_volcano_plots | Man page Source code |
| newEdgeLines | Source code |
| newEdgeSector | Source code |
| newTissueFromCircle | Source code |
| newTissueFromEllipse | Source code |
| newTissueFromPolygon | Source code |
| pairwise_LFQ | Man page |
| plot_Max_Venn | Man page Source code |
| plot_target | Man page Source code |
| plot_volcano | Man page Source code |
| pnpoly | Source code |
| pnpolytest | Source code |
| proc_mspTable | Man page |
| quick_venn_table | Source code |
| read_proteinGroups | Man page Source code |
| remove.nonintersectionpoints | Source code |
| rename.node | Source code |
| renameFaces | Source code |
| sector.to.xy | Source code |
| setSignature | Source code |
| spliceEdgeIntoFace | Source code |
| spliceinstead | Source code |
| tibble_add_column | Man page Source code |
| union | Source code |
| updateSignature | Source code |
| vect2df | Source code |
| vect2list | Source code |
