make_tiers: Function make_tiers
In devradiumking/maxabpp: Visualization of MaxQuant output for activity-based protein profiling experiments
View source: R/tieredsetintersection.R
Description
Generate a tier list from a set of lists of protein groups identified by MaxQuant for cross-list comparisons. This function calls Max_Venn() and calculates sums of redundant Venn table generated by Max_Venn. Individual proteins in each protein group are compared to others; each protein group is treated as a vector of individual string elements for comparisons. Also see Max_Venn(IndividualAnalysis = TRUE)
Usage
1
make_tiers(setLists)
Arguments
setLists
a setList of protein groups generated by make_proteinGroups_setList()
devradiumking/maxabpp documentation built on May 31, 2020, 9:01 a.m.
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View source: R/tieredsetintersection.R
Description
Generate a tier list from a set of lists of protein groups identified by MaxQuant for cross-list comparisons. This function calls Max_Venn() and calculates sums of redundant Venn table generated by Max_Venn. Individual proteins in each protein group are compared to others; each protein group is treated as a vector of individual string elements for comparisons. Also see Max_Venn(IndividualAnalysis = TRUE)
Usage
1 | make_tiers(setLists)
|
Arguments
setLists |
a setList of protein groups generated by |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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