read_proteinGroups: Function read_proteinGroups

In devradiumking/maxabpp: Visualization of MaxQuant output for activity-based protein profiling experiments

Description

Read all .txt files (proteinGroups.txt renamed according to a specific experimental condition) a user-created folder.

Usage

read_proteinGroups(
  folderName = "proteinGroups",
  selectColumnNames = defaultColumnNames
)

Arguments

folderName

Default folder name is "proteinGroups", the fold must exist in working directory, use getwd() and dir() to check

selectColumnNames

Default selected column names are "Protein IDs", "Majority protein IDs", "Peptide counts (all)", "Peptide counts (razor+unique)", "Peptide counts (unique)", "Protein names", "Gene names", "Number of proteins", "Peptides", "Razor + unique peptides", "Unique peptides", "Sequence coverage [ "Mol. weight [kDa]", "Sequence length", "Sequence lengths", "Q-value", "Score", "Intensity", "MS/MS count", "Only identified by site", "Potential contaminant"

Value

a list of dataframes (each dataframe contains data from each file)

devradiumking/maxabpp documentation built on May 31, 2020, 9:01 a.m.