# screenFiles ------------------------------------------------------------
# function used to screen the data files, built upon other progress functions
screenFiles <- function(datafilename, metafilename, dataseparator, metaseparator, data_character, meta_character, datafile, metafile) {
output <- list("results" = fileValidation(datafilename, metafilename, dataseparator, metaseparator, datafile, metafile))
if (any(output$results[["result"]] == "FAIL")) {
# Failed file validation ---------------------------------------------------------------------------------
output$progress_stage <- list(
"src" = "www/progress_1.png",
"alt" = "Failed at file validation stage, fix it then screen again"
)
output$progress_message <- "Failed at file validation stage, fix it then screen again"
} else {
# Pre-check stage 1 ---------------------------------------------------------------------------------
output$results <- rbind(output$results, preCheck1(datafile, metafile))
if (any(output$results[["result"]] == "FAIL")) {
# Failed pre-checks at stage 1 ---------------------------------------------------------------------------------
output$progress_stage <- list(
"src" = "www/progress_2.png",
"alt" = "Failed at pre-screening stage 1, fix it then screen again"
)
output$progress_message <- "Failed at pre-screening stage 1, fix it then screen again"
} else {
# Pre-check stage 2 ---------------------------------------------------------------------------------
output$results <- rbind(output$results, preCheck2(data_character, meta_character, datafile, metafile))
if (any(output$results[["result"]] == "FAIL")) {
# Failed pre-checks stage 2 ---------------------------------------------------------------------------------
output$progress_stage <- list(
"src" = "www/progress_3.png",
"alt" = "Failed at pre-screening stage 2, fix it then screen again"
)
output$progress_message <- "Failed at pre-screening stage 2, fix it then screen again"
} else {
# Main tests ----------------------------------------------------------------------------------
output$results <- rbind(output$results, mainTests(data_character, meta_character, datafile, metafile))
if (any(output$results[["result"]] == "FAIL")) {
# Failed the main checks ---------------------------------------------------------------------------------
output$progress_stage <- list(
"src" = "www/progress_4.png",
"alt" = "Failed at full checks stage, fix it then screen again"
)
output$progress_message <- "Made it to the full screening checks but failed"
} else {
# Passed all checks ---------------------------------------------------------------------------------
output$progress_stage <- list(
"src" = "www/progress_5.png",
"alt" = "Made it to the full screening checks and passed"
)
output$progress_message <- "Made it to the full screening checks and passed"
}
}
}
}
return(output)
}
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