omicplotR-package: 'omicplotR'
In dgiguer/omicplotR_pkg: Visual Exploration of Omic Datasets Using a Shiny App
Description
Details
Author(s)
See Also
Description
A Shiny app for visual exploration of omic datasets as
compositions, and differential abundance analysis using ALDEx2. Useful for
exploring RNA-seq, meta-RNA-seq, 16s rRNA gene sequencing and more with
visualizations such as principal component analysis biplot (coloured using
metadata for visualizing each variable), association plots (igraph),
dendrograms and stacked bar plots, and effect plots (ALDEx2). Input is a
table of counts and metadata file (if metadata exists), with options to
filter data by count or by metadata to remove low counts, or to visualize
select samples according to selected metadata. The Shiny app's graphical
user interface facilitates visual exploration for new and experienced
users of R alike.
Details
To launch the shiny app in your default browser, type
omicplotr.run().
Author(s)
Daniel Giguere, Jean Macklaim, Greg Gloor
See Also
dgiguer/omicplotR_pkg documentation built on Nov. 18, 2019, 6:31 p.m.
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Description Details Author(s) See Also
Description
A Shiny app for visual exploration of omic datasets as compositions, and differential abundance analysis using ALDEx2. Useful for exploring RNA-seq, meta-RNA-seq, 16s rRNA gene sequencing and more with visualizations such as principal component analysis biplot (coloured using metadata for visualizing each variable), association plots (igraph), dendrograms and stacked bar plots, and effect plots (ALDEx2). Input is a table of counts and metadata file (if metadata exists), with options to filter data by count or by metadata to remove low counts, or to visualize select samples according to selected metadata. The Shiny app's graphical user interface facilitates visual exploration for new and experienced users of R alike.
Details
To launch the shiny app in your default browser, type
omicplotr.run().
Author(s)
Daniel Giguere, Jean Macklaim, Greg Gloor
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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