R/intestine.R

In dgrun/FateID: Quantification of Fate Bias in Multipotent Progenitors

#' Single-cell transcriptome data of intestinal epithelial cells
#'
#' This dataset contains gene expression values, i. e. transcript counts, of 278 intestinal epithelial cells, and additional information on different cell types in this sample.
#'
#' @format A list of the following 5 components:
#' \describe{
#'   \item{x}{data frame with genes as rows and cells as columns. This reduced data frame only contains expression of the most variable genes.}
#'   \item{y}{vector containing a clustering partition of the 278 cells into different cell types}
#'   \item{v}{data frame with genes as rows and cells as columns. This data frame contains expression of all genes.}
#'   \item{fcol}{vector containing colour values for all clusters in \code{y}}
#' }
#'
#' @return None
#' @references Grün et al. (2016) Cell Stem Cell 19(2): 266-77
#' (\href{https://pubmed.ncbi.nlm.nih.gov/27345837/}{PubMed})
#'
"intestine"