normfinder: Analyze a data set for gene expression stability with the...

In dhammarstrom/generefer: Functions for finding stable reference genes in qPCR-experiments

Analyze a data set for gene expression stability with the NormFinder algorithm

Description

Analyze a data set for gene expression stability with the NormFinder algorithm

Usage

normfinder(data, group = TRUE, ctVal = FALSE, pStabLim = 0.3,
  sample = "sample", gene = "gene", groups = "group", cq = "cq")

Arguments

data	A data frame with sample,gene and group identifier and expression values. Expression values can be raw Cq or on linear scale.
ctVal	Logical, TRUE if raw Cq values
pStabLim	numeric value on stability threshold.
sample	Character specifies the column name of sample identifiers (default == "sample")
gene	Character specifies the column name of gene identifiers (default == "gene")
groups	Logical, if TRUE, the function will consider grouping variables
cq	Character specifies the column of cq-/expression-values
groups	Character specifies the column name of group identifiers

Author(s)

person("Claus", " Lindbjerg Andersen", role = "aut")

dhammarstrom/generefer documentation built on April 28, 2024, 6:40 a.m.