Man pages for dianalow/nMyo
nMyo
| addggText | Assign text annotation to the ggplot scatterplot |
| DataTester | Modify the data if the subsequent steps of DIMER have been... |
| DateStamp | Create a date stamp |
| DEplot_entries | Find the marker of interest in the differential expression... |
| doMA | Generates the MA plot |
| doScatterDR | Generates the dimensionality reduction scatterplot |
| doViolin | Generates the Violin plot |
| doVolcano | Generates the Volcano plot |
| filterSampleData | Filter the Samples of the Design file based on the filters |
| filterSampleDEstatsData | Filter the Samples of the DE file based on the filters |
| finaliseMarkerList | Read the DE_file and tests the data validity |
| findGeneType | Find the marker of interest in the data |
| firstStop | Stop the analysis if the files are not provided or the... |
| fixFilteredData | It creates the filteredData slot |
| GeneNames | GeneNames |
| geom_split_violin | Splits the violin into two components |
| GeomSplitViolin | Splits the violin into two components |
| gg_color_hue | Color specifications |
| grapes-and-grapes | Join two strings |
| MA | Generates the MA plot |
| makecolors_scatterplot | Assign colors to the scatterplot |
| makecolors_violin | Assign colors to the violin |
| MarkerQuery | Select the marker of interest for visualisation |
| matchDEentries | Find the marker of interest in the differential expression... |
| nMyo_Data | nMyo_Data |
| plotSaver | Plot generator function |
| plotSaver_helper | Plot generator function |
| readData | Read the data |
| ReadMarkers | Read the Markers file |
| RequiredDataReader | Read the required data files |
| run_nMyo | code for running shiny app |
| Scatter | Generate the scatterplot |
| ShapeSize | Assign dot shapes and sizes to the scatterplot |
| tableSaver | Table generator function |
| testDataValidity | Read the DE_file and tests the data validity |
| testFilters | Check the filtering variables |
| testFiltersFactor | Check the factor filtering variables |
| testFiltersNumeric | Check the numeric filtering variables |
| validity | Test the data validity |
| Violin | Generates the Violin plot |
| Volcano | Generates the Volcano plot |
