addggText | Assign text annotation to the ggplot scatterplot |
DataTester | Modify the data if the subsequent steps of DIMER have been... |
DateStamp | Create a date stamp |
DEplot_entries | Find the marker of interest in the differential expression... |
doMA | Generates the MA plot |
doScatterDR | Generates the dimensionality reduction scatterplot |
doViolin | Generates the Violin plot |
doVolcano | Generates the Volcano plot |
filterSampleData | Filter the Samples of the Design file based on the filters |
filterSampleDEstatsData | Filter the Samples of the DE file based on the filters |
finaliseMarkerList | Read the DE_file and tests the data validity |
findGeneType | Find the marker of interest in the data |
firstStop | Stop the analysis if the files are not provided or the... |
fixFilteredData | It creates the filteredData slot |
GeneNames | GeneNames |
geom_split_violin | Splits the violin into two components |
GeomSplitViolin | Splits the violin into two components |
gg_color_hue | Color specifications |
grapes-and-grapes | Join two strings |
MA | Generates the MA plot |
makecolors_scatterplot | Assign colors to the scatterplot |
makecolors_violin | Assign colors to the violin |
MarkerQuery | Select the marker of interest for visualisation |
matchDEentries | Find the marker of interest in the differential expression... |
nMyo_Data | nMyo_Data |
plotSaver | Plot generator function |
plotSaver_helper | Plot generator function |
readData | Read the data |
ReadMarkers | Read the Markers file |
RequiredDataReader | Read the required data files |
run_nMyo | code for running shiny app |
Scatter | Generate the scatterplot |
ShapeSize | Assign dot shapes and sizes to the scatterplot |
tableSaver | Table generator function |
testDataValidity | Read the DE_file and tests the data validity |
testFilters | Check the filtering variables |
testFiltersFactor | Check the factor filtering variables |
testFiltersNumeric | Check the numeric filtering variables |
validity | Test the data validity |
Violin | Generates the Violin plot |
Volcano | Generates the Volcano plot |
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