Description Usage Arguments Value Examples
View source: R/ResultsGenerator.R
It creates the MA plot for a particular cell type and condition
1 2 3 4 5 6 7 8 9 10 11 12 |
Data |
list. The outcome of MarkerQuery(). |
filters |
character. A set of conditions that specifies which differential expression results should be plotted. It should ALWAYS be a level of the Comparison variable of the DEstats component. |
logFC |
numeric. A positive value specifying the symmetric logFC cut-off to be depicted. Default is 1. |
FDR |
numeric. A value between (0,1] specifying the FDR cutoff to be depicted. Default is 0.01. |
show.more |
logical. If TRUE, all markers of Data$filteredData$Marker_List are highlighted, otherwise only the marker of Data$selectedData$Marker_List is highlighted. Default is FALSE. |
size |
numeric. It specifies the plotted dot size. Default is 5. |
show.plot |
logical. If TRUE, it shows the plot on the screen. Default is TRUE. |
save.plot |
logical. If TRUE, it saves the plot in an automatically generated folder <data folder>/Output/<InteractivePlots or NonInteractivePlots>. Default is FALSE. |
save.table |
logical. If TRUE, it saves the plot in an automatically generated folder <data folder>/Output/Tables. Default if FALSE. |
interactive |
logical. If TRUE, it generates an interactive plot with plotly otherwise a static plot with ggplot. Default is TRUE. |
data list. The plots and the tables of interest stored in automatically generated <data folder>/Output/ folders. The tables include a summary table of quantiles of the marker expression, the differential expression analysis results of the markers of interest and the normalised data for the markers of interest.
1 2 3 4 5 6 7 8 9 10 11 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.