.Rbuildignore
.gitignore
BBSstories.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/utils-pipe.R
README.md
man/pipe.Rd
slope_and_fuzz.Rmd
slope_and_fuzz.md
slope_and_fuzz_files/figure-gfm/extract a few-1.png
slope_and_fuzz_files/figure-gfm/extract a few-2.png
slope_and_fuzz_files/figure-gfm/extract a few-3.png
slope_and_fuzz_files/figure-gfm/load hartland-1.png
slope_and_fuzz_files/figure-gfm/residuals-1.png
slope_and_fuzz_files/figure-gfm/residuals-2.png
slope_and_fuzz_files/figure-gfm/residuals-3.png
slope_and_fuzz_files/figure-gfm/residuals-4.png
stories/comanche_pk_sv_scale.Rmd
stories/comanche_pk_sv_scale.md
stories/comanche_pk_sv_scale_files/figure-gfm/abund v compensation-1.png
stories/comanche_pk_sv_scale_files/figure-gfm/abund v energy-1.png
stories/comanche_pk_sv_scale_files/figure-gfm/abund v energy-2.png
stories/comanche_pk_sv_scale_files/figure-gfm/compare ur isd methods-1.png
stories/comanche_pk_sv_scale_files/figure-gfm/compare ur isd methods-2.png
stories/comanche_pk_sv_scale_files/figure-gfm/compare ur isd methods-3.png
stories/comanche_pk_sv_scale_files/figure-gfm/lms-1.png
stories/comanche_pk_sv_scale_files/figure-gfm/lms-2.png
stories/comanche_pk_sv_scale_files/figure-gfm/lms-3.png
stories/comanche_pk_sv_scale_files/figure-gfm/lms-4.png
stories/comanche_pk_sv_scale_files/figure-gfm/randomize isd-1.png
stories/comanche_pk_sv_scale_files/figure-gfm/randomize isd-2.png
stories/comanche_pk_sv_scale_files/figure-gfm/randomize isd-3.png
stories/comanche_pk_sv_scale_files/figure-gfm/randomized mean es-1.png
stories/comanche_pk_sv_scale_files/figure-gfm/species list for fun-1.png
stories/comanche_pk_sv_scale_files/figure-gfm/state variables-1.png
stories/comanche_pk_sv_scale_files/figure-gfm/unaltered individuals-1.png
stories/fuzz_fourth_draft.Rmd
stories/fuzz_fourth_draft.md
stories/fuzz_fourth_draft_files/figure-gfm/all-1.png
stories/fuzz_fourth_draft_files/figure-gfm/all-2.png
stories/fuzz_fourth_draft_files/figure-gfm/datasets vis-1.png
stories/fuzz_fourth_draft_files/figure-gfm/datasets vis-2.png
stories/fuzz_fourth_draft_files/figure-gfm/datasets vis-3.png
stories/fuzz_fourth_draft_files/figure-gfm/flat high-1.png
stories/fuzz_fourth_draft_files/figure-gfm/flat low-1.png
stories/fuzz_fourth_draft_files/figure-gfm/loading some real datasets-1.png
stories/fuzz_fourth_draft_files/figure-gfm/one lm-1.png
stories/fuzz_fourth_draft_files/figure-gfm/sim function-1.png
stories/fuzz_fourth_draft_files/figure-gfm/sims plots-1.png
stories/fuzz_fourth_draft_files/figure-gfm/sims plots-2.png
stories/fuzz_fourth_draft_files/figure-gfm/sims plots-3.png
stories/fuzz_fourth_draft_files/figure-gfm/slope intuition-1.png
stories/fuzz_fourth_draft_files/figure-gfm/slope intuition-2.png
stories/fuzz_fourth_draft_files/figure-gfm/trend high-1.png
stories/fuzz_fourth_draft_files/figure-gfm/trend low-1.png
stories/fuzz_fourth_draft_files/figure-gfm/vis-1.png
stories/fuzz_fourth_draft_files/figure-gfm/vis-2.png
stories/fuzz_fourth_draft_files/figure-gfm/vis-3.png
stories/fuzz_second_draft.Rmd
stories/fuzz_second_draft.md
stories/fuzz_second_draft_files/figure-gfm/all-1.png
stories/fuzz_second_draft_files/figure-gfm/all-2.png
stories/fuzz_second_draft_files/figure-gfm/datasets vis-1.png
stories/fuzz_second_draft_files/figure-gfm/datasets vis-2.png
stories/fuzz_second_draft_files/figure-gfm/datasets vis-3.png
stories/fuzz_second_draft_files/figure-gfm/flat high-1.png
stories/fuzz_second_draft_files/figure-gfm/flat low-1.png
stories/fuzz_second_draft_files/figure-gfm/loading some real datasets-1.png
stories/fuzz_second_draft_files/figure-gfm/loading some real datasets-2.png
stories/fuzz_second_draft_files/figure-gfm/one lm-1.png
stories/fuzz_second_draft_files/figure-gfm/one lm-2.png
stories/fuzz_second_draft_files/figure-gfm/one lm-3.png
stories/fuzz_second_draft_files/figure-gfm/sim function-1.png
stories/fuzz_second_draft_files/figure-gfm/sims plots-1.png
stories/fuzz_second_draft_files/figure-gfm/sims plots-2.png
stories/fuzz_second_draft_files/figure-gfm/sims plots-3.png
stories/fuzz_second_draft_files/figure-gfm/trend high-1.png
stories/fuzz_second_draft_files/figure-gfm/trend low-1.png
stories/fuzz_second_draft_files/figure-gfm/trying hartland-1.png
stories/fuzz_second_draft_files/figure-gfm/vis-1.png
stories/fuzz_second_draft_files/figure-gfm/vis-2.png
stories/fuzz_second_draft_files/figure-gfm/vis-3.png
stories/fuzz_sims.Rmd
stories/fuzz_sims.md
stories/fuzz_sims_files/figure-gfm/all-1.png
stories/fuzz_sims_files/figure-gfm/extract lm metrics-1.png
stories/fuzz_sims_files/figure-gfm/extract lm metrics-2.png
stories/fuzz_sims_files/figure-gfm/extract lm metrics-3.png
stories/fuzz_sims_files/figure-gfm/extract lm metrics-4.png
stories/fuzz_sims_files/figure-gfm/extract lm metrics-5.png
stories/fuzz_sims_files/figure-gfm/flat high-1.png
stories/fuzz_sims_files/figure-gfm/flat low-1.png
stories/fuzz_sims_files/figure-gfm/trend high-1.png
stories/fuzz_sims_files/figure-gfm/trend low-1.png
stories/fuzz_third_draft.Rmd
stories/fuzz_third_draft.md
stories/fuzz_third_draft_files/figure-gfm/by mean-1.png
stories/fuzz_third_draft_files/figure-gfm/by mean-2.png
stories/hartland.Rmd
stories/hartland.html
stories/hartland.md
stories/hartland_files/figure-gfm/abund v compensation lms-1.png
stories/hartland_files/figure-gfm/abund v compensation lms-2.png
stories/hartland_files/figure-gfm/abund v compensation-1.png
stories/hartland_files/figure-gfm/abund v compensation-2.png
stories/hartland_files/figure-gfm/abund v energy-1.png
stories/hartland_files/figure-gfm/abund v energy-2.png
stories/hartland_files/figure-gfm/compare ur isd methods-1.png
stories/hartland_files/figure-gfm/compare ur isd methods-2.png
stories/hartland_files/figure-gfm/isd all individuals-1.png
stories/hartland_files/figure-gfm/isd playing-1.png
stories/hartland_files/figure-gfm/isd playing-2.png
stories/hartland_files/figure-gfm/isd playing-3.png
stories/hartland_files/figure-gfm/isds-1.png
stories/hartland_files/figure-gfm/lms-1.png
stories/hartland_files/figure-gfm/lms-2.png
stories/hartland_files/figure-gfm/lms-3.png
stories/hartland_files/figure-gfm/lms-4.png
stories/hartland_files/figure-gfm/mean isds-1.png
stories/hartland_files/figure-gfm/plot annual isds-1.png
stories/hartland_files/figure-gfm/plot annual isds-2.png
stories/hartland_files/figure-gfm/pops-1.png
stories/hartland_files/figure-gfm/position over time-1.png
stories/hartland_files/figure-gfm/position over time-2.png
stories/hartland_files/figure-gfm/position over time-3.png
stories/hartland_files/figure-gfm/position over time-4.png
stories/hartland_files/figure-gfm/randomize isd-1.png
stories/hartland_files/figure-gfm/randomize isd-2.png
stories/hartland_files/figure-gfm/randomize isd-3.png
stories/hartland_files/figure-gfm/species list for fun-1.png
stories/hartland_files/figure-gfm/state variables-1.png
stories/hartland_files/figure-gfm/unaltered individuals-1.png
stories/hartland_files/figure-gfm/weighted mean isds-1.png
stories/hartland_sv_scale_summary.Rmd
stories/hartland_sv_scale_summary.md
stories/hartland_sv_scale_summary_files/figure-gfm/abund v compensation-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/abund v energy-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/abund v energy-2.png
stories/hartland_sv_scale_summary_files/figure-gfm/compare ur isd methods-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/compare ur isd methods-2.png
stories/hartland_sv_scale_summary_files/figure-gfm/compare ur isd methods-3.png
stories/hartland_sv_scale_summary_files/figure-gfm/lms-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/lms-2.png
stories/hartland_sv_scale_summary_files/figure-gfm/lms-3.png
stories/hartland_sv_scale_summary_files/figure-gfm/lms-4.png
stories/hartland_sv_scale_summary_files/figure-gfm/plot annual isds-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/plot annual isds-2.png
stories/hartland_sv_scale_summary_files/figure-gfm/position over time-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/position over time-2.png
stories/hartland_sv_scale_summary_files/figure-gfm/position over time-3.png
stories/hartland_sv_scale_summary_files/figure-gfm/position over time-4.png
stories/hartland_sv_scale_summary_files/figure-gfm/randomize isd-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/randomize isd-2.png
stories/hartland_sv_scale_summary_files/figure-gfm/randomize isd-3.png
stories/hartland_sv_scale_summary_files/figure-gfm/species list for fun-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/state variables-1.png
stories/hartland_sv_scale_summary_files/figure-gfm/unaltered individuals-1.png
stories/portal_rodents_sv_scale.Rmd
stories/portal_rodents_sv_scale.md
stories/portal_rodents_sv_scale_files/figure-gfm/abund v compensation-1.png
stories/portal_rodents_sv_scale_files/figure-gfm/abund v energy-1.png
stories/portal_rodents_sv_scale_files/figure-gfm/abund v energy-2.png
stories/portal_rodents_sv_scale_files/figure-gfm/compare ur isd methods-1.png
stories/portal_rodents_sv_scale_files/figure-gfm/compare ur isd methods-2.png
stories/portal_rodents_sv_scale_files/figure-gfm/compare ur isd methods-3.png
stories/portal_rodents_sv_scale_files/figure-gfm/lms-1.png
stories/portal_rodents_sv_scale_files/figure-gfm/lms-2.png
stories/portal_rodents_sv_scale_files/figure-gfm/lms-3.png
stories/portal_rodents_sv_scale_files/figure-gfm/lms-4.png
stories/portal_rodents_sv_scale_files/figure-gfm/randomize isd-1.png
stories/portal_rodents_sv_scale_files/figure-gfm/randomize isd-2.png
stories/portal_rodents_sv_scale_files/figure-gfm/randomize isd-3.png
stories/portal_rodents_sv_scale_files/figure-gfm/species list for fun-1.png
stories/portal_rodents_sv_scale_files/figure-gfm/state variables-1.png
stories/portal_rodents_sv_scale_files/figure-gfm/unaltered individuals-1.png
stories/reproduce_white_04.R
stories/reproduce_white_04.Rmd
stories/reproduce_white_04.md
stories/reproduce_white_04_files/figure-gfm/everything-1.png
stories/reproduce_white_04_files/figure-gfm/everything-2.png
stories/reproduce_white_04_files/figure-gfm/setup-1.png
stories/reproduce_white_04_files/figure-gfm/setup-2.png
stories/something_else_scale_summary.Rmd
stories/something_else_scale_summary.md
stories/something_else_scale_summary_files/figure-gfm/abund v compensation-1.png
stories/something_else_scale_summary_files/figure-gfm/abund v energy-1.png
stories/something_else_scale_summary_files/figure-gfm/abund v energy-2.png
stories/something_else_scale_summary_files/figure-gfm/compare ur isd methods-1.png
stories/something_else_scale_summary_files/figure-gfm/compare ur isd methods-2.png
stories/something_else_scale_summary_files/figure-gfm/lms-1.png
stories/something_else_scale_summary_files/figure-gfm/lms-2.png
stories/something_else_scale_summary_files/figure-gfm/lms-3.png
stories/something_else_scale_summary_files/figure-gfm/lms-4.png
stories/something_else_scale_summary_files/figure-gfm/randomize isd-1.png
stories/something_else_scale_summary_files/figure-gfm/randomize isd-2.png
stories/something_else_scale_summary_files/figure-gfm/randomize isd-3.png
stories/something_else_scale_summary_files/figure-gfm/species list for fun-1.png
stories/something_else_scale_summary_files/figure-gfm/state variables-1.png
stories/something_else_scale_summary_files/figure-gfm/unaltered individuals-1.png