TCGA.breast.small: Breast cancer bulk RNA-Seq samples from TCGA Research Network

In diegommcc/digitalDLSorteRdata: Data Package for the digitalDLSorteR Software R Package

Breast cancer bulk RNA-Seq samples from TCGA Research Network

Description

Subset of breast cancer bulk RNA-Seq samples from TCGA Research Network. FPKMs were transformed to TPMs and aggregated based on SYMBOL genes.

Usage

TCGA.breast.small

Format

An object of class matrix (inherits from array) with 44831 rows and 15 columns.

Source

https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga

References

Koboldt, D. C., Fulton, R. S., McLellan, M. D., Schmidt, H., Kalicki-Veizer, J., McMichael, J. F., et al. (2012). Comprehensive molecular portraits of human breast tumours. Nature 490 (7418), 61–70. doi: 10.1038/nature11412

Ciriello, G., Gatza, M. L., Beck, A. H., Wilkerson, M. D., Rhie, S. K., Pastore, A., et al. (2015). Comprehensive molecular portraits of invasive lobular breast cancer. Cell. 163 (2), 506–519. doi: 10.1016/j.cell.2015.09.033

Torroja, C. and Sánchez-Cabo, F. (2019). digitalDLSorter: A Deep Learning algorithm to quantify immune cell populations based on scRNA-Seq data. Frontiers in Genetics 10, 978. doi: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.3389/fgene.2019.00978")}

diegommcc/digitalDLSorteRdata documentation built on April 6, 2024, 3:01 a.m.