TCGA.colon.se: Colorectal cancer bulk RNA-Seq samples from TCGA Research...
In diegommcc/digitalDLSorteRdata: Data Package for the digitalDLSorteR Software R Package
TCGA.colon.se R Documentation
Colorectal cancer bulk RNA-Seq samples from TCGA Research Network
Description
Colorectal cancer bulk RNA-Seq samples from TCGA Research Network. These data
is provided as raw counts.
Usage
TCGA.colon.se
Format
An object of class SummarizedExperiment with 59085 rows and 521 columns.
Source
https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga
References
Koboldt, D. C., Fulton, R. S., McLellan, M. D., Schmidt, H.,
Kalicki-Veizer, J., McMichael, J. F., et al. (2012). Comprehensive
molecular portraits of human breast tumours. Nature 490 (7418), 61–70. doi:
10.1038/nature11412
Ciriello, G., Gatza, M. L., Beck, A. H., Wilkerson, M. D., Rhie, S. K.,
Pastore, A., et al. (2015). Comprehensive molecular portraits of invasive
lobular breast cancer. Cell. 163 (2), 506–519. doi:
10.1016/j.cell.2015.09.033
Torroja, C. and Sánchez-Cabo, F. (2019). digitalDLSorter: A Deep Learning
algorithm to quantify immune cell populations based on scRNA-Seq data.
Frontiers in Genetics 10, 978. doi: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.3389/fgene.2019.00978")}
diegommcc/digitalDLSorteRdata documentation built on April 6, 2024, 3:01 a.m.
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| TCGA.colon.se | R Documentation |
Colorectal cancer bulk RNA-Seq samples from TCGA Research Network
Description
Colorectal cancer bulk RNA-Seq samples from TCGA Research Network. These data is provided as raw counts.
Usage
TCGA.colon.se
Format
An object of class SummarizedExperiment with 59085 rows and 521 columns.
Source
https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga
References
Koboldt, D. C., Fulton, R. S., McLellan, M. D., Schmidt, H., Kalicki-Veizer, J., McMichael, J. F., et al. (2012). Comprehensive molecular portraits of human breast tumours. Nature 490 (7418), 61–70. doi: 10.1038/nature11412
Ciriello, G., Gatza, M. L., Beck, A. H., Wilkerson, M. D., Rhie, S. K., Pastore, A., et al. (2015). Comprehensive molecular portraits of invasive lobular breast cancer. Cell. 163 (2), 506–519. doi: 10.1016/j.cell.2015.09.033
Torroja, C. and Sánchez-Cabo, F. (2019). digitalDLSorter: A Deep Learning algorithm to quantify immune cell populations based on scRNA-Seq data. Frontiers in Genetics 10, 978. doi: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.3389/fgene.2019.00978")}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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