applyThreshold: Apply a threshold to a community matrix.
In dinilu/paleoCLMs-package: Miscelanea package for paleoCLMs project
Description
Usage
Arguments
Value
Author(s)
Description
This function apply a species specific threshold or a single threshold to a community matrix, converting abundance data to presence/absence data.
Usage
1
applyThreshold(commMatrix, threshold)
Arguments
commMatrix
Matrix. Community matrix (species by sites) with abundance data (or predictions from a model).
threshold
Data.frame (or Matrix) or numeric value. If the threshold is a value it will apply the same threshold to all the species. If the threshold is a data.frame it should have the same number of rows as species in the community matrix and two columns. The first columns should indicate the name of the species and the second the threshold for each species.
Value
Matrix. The output is a new community matrix with the same dimmensions as the input data (data). The values are now binary instead of abundances.
Author(s)
Diego Nieto Lugilde
dinilu/paleoCLMs-package documentation built on May 15, 2019, 8:46 a.m.
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Description Usage Arguments Value Author(s)
Description
This function apply a species specific threshold or a single threshold to a community matrix, converting abundance data to presence/absence data.
Usage
1 | applyThreshold(commMatrix, threshold)
|
Arguments
commMatrix |
Matrix. Community matrix (species by sites) with abundance data (or predictions from a model). |
threshold |
Data.frame (or Matrix) or numeric value. If the threshold is a value it will apply the same threshold to all the species. If the threshold is a data.frame it should have the same number of rows as species in the community matrix and two columns. The first columns should indicate the name of the species and the second the threshold for each species. |
Value
Matrix. The output is a new community matrix with the same dimmensions as the input data (data). The values are now binary instead of abundances.
Author(s)
Diego Nieto Lugilde
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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