Man pages for dkneis/rodeo
A Code Generator for ODE-Based Models
| buildFromWorkbook | Build a model from the contents of a workbook |
| compile | Generate Executable Code |
| dynamics | Numerical Integration |
| exportDF | Export a Data Frame as HTML/TEX Code |
| finalize | Clean-up a 'rodeo' Object |
| forcingFunctions | Generation of Forcing Functions in Fortran |
| funs | Declaration of Functions |
| generate | Code Generator |
| getPars | Query Values of Parameters |
| getVars | Query Values of State Variables |
| initialize | Initialize a 'rodeo' Object |
| initStepper | Initialize Internal ODE Solver |
| libFunc | Return name of library function |
| libName | Return library name |
| pars | Declaration of Parameters |
| plotStoichiometry | Plot Qualitative Stoichiometry Matrix |
| pros | Declaration of Processes |
| rodeo-class | 'rodeo' Class |
| rodeo-package | Package to Facilitate ODE-Based Modeling |
| setPars | Assign Values to Parameters |
| setVars | Assign Values to State Variables |
| step | Numerical Integration Over a Single Time Step |
| stoi | Specification of Stoichiometry |
| stoiCheck | Validation of a Stoichiometry Matrix |
| stoichiometry | Return the Stoichiometry Matrix |
| stoiCreate | Stoichiometry Matrix from Reaction Equations |
| vars | Declaration of Variables |
