petab_getMeasurementParsMapping: Parse the parameters columns in measurementData

In dlill/petab: PEtab support for R

Parse the parameters columns in measurementData

Description

Parse the parameters columns in measurementData

Usage

petab_getMeasurementParsMapping(
  pe,
  column = c("observableParameters", "noiseParameters")[1]
)

Arguments

column	character(1L). one of c("observableParameters", "noiseParameters")
measurementData	petab$measurementData. Uses only columns observableId,simulationConditionId and "column"

Value

data.table(condition, Innerpars... = Outerpars...) of local parameters. Can be added to a gridlist with dMod::indiv_addLocalParsToGridList()

Author(s)

Daniel Lill ([e-mail])

Examples

measurementData <- data.table(
observableId = c("obsE"),
simulationConditionId = c("C1", "C2"),
observableParameters = c("scale;offset", "1;offset"),
noiseParameters = "sigmaAbs"
)
experimentalCondition <- data.table(conditionId = c("C1", "C2", "C3"))
pe <- list(measurementData = measurementData, experimentalCondition = experimentalCondition)
petab_getMeasurementParsMapping(pe, "noiseParameters")
petab_getMeasurementParsMapping(pe, "observableParameters")
# suggested use: indiv_addLocalParsToGridlist ...

dlill/petab documentation built on Oct. 9, 2022, 3:07 p.m.