petab_joinDCO: Create one big table containing measurementData, observables...

In dlill/petab: PEtab support for R

Create one big table containing measurementData, observables and experimentalCondition

Description

conditionId is joined with simulationConditionId

Usage

petab_joinDCO(pe, FLAGincludeMetaInformation = TRUE)

Arguments

petab

petab

Value

data.table

Author(s)

Daniel Lill ([e-mail])

See Also

Other dco: dco_expandPatterns(), petab_mutateDCO(), petab_unjoinDCO()

Examples

# Without metaInformation
pe <- petab_exampleRead("01")
dco <- petab_joinDCO(pe)
bla <- petab_unjoinDCO(dco,pe)

# With metaInformation including a "pattern" entry
pe <- petab_exampleRead("04")
pe <- petab_mutateDCO(pe, i = conditionId == "C1", j = `:=`(conditionId = "cell1_dose1"))
pe <- petab_mutateDCO(pe, i = conditionId == "C2", j = `:=`(conditionId = "cell1_dose2"))
pe$meta$metaInformation <- list(experimentalCondition = list(conditionId = list(pattern = "celltype_dose")))
dco <- petab_joinDCO(pe)
dco

dlill/petab documentation built on Oct. 9, 2022, 3:07 p.m.