petab_parameterFormulaInjection: Create a parameterFormulaInjection

In dlill/petab: PEtab support for R

Create a parameterFormulaInjection

Description

See example-02

Usage

petab_parameterFormulaInjection(
  parameterId,
  parameterFormula,
  trafoType = "SteadyState"
)

Arguments

parameterId	e.g. "kprodS"
parameterFormula	"kdegS * S"

Details

Inject a trafo between pEst and x

This is a somewhat elegant, somewhat hacky implementation of "complicated" parameter trafos, e.g. custom steady state trafos. It would be nicer to have this stuff directly in the SBML file, but I don't have the time for that now. Furthermore, some functionality of the import will be reusable when this is moved to SBML as assignmentRule or sth like that

Value

data.table(parameterId, parameterFormula)

Author(s)

Daniel Lill ([e-mail])

dlill/petab documentation built on Oct. 9, 2022, 3:07 p.m.