petab_python_setup: Setup the connection to python petab

In dlill/petab: PEtab support for R

Setup the connection to python petab

Description

• if petab virtualenv not present:

  • sets up a virtualenv called "petab"

  • pip installs petab

• uses "petab" virtual env

• imports and returns petab

Usage

petab_python_setup(FLAGreturnpetabSelect = FALSE)

Arguments

FLAGreturnpetabSelect

Details

use as pe <- petab_python_setup()

If this function fails, try one of these:

1. Restart RStudio from your terminal

2. petab::petab_python_installPackages(TRUE)

3. Recreate the *.Rproj file of your current project

Value

python module, see reticulate::import()

Author(s)

Daniel Lill ([e-mail])

See Also

Other pepy: pepy_sample_parameter_startpoints(), petab_python_installPackages()

Examples

pepy <- petab_python_setup()
# pepy$lint(pe)

peps <- petab_python_setup(FLAGreturnpetabSelect = TRUE)

dlill/petab documentation built on Oct. 9, 2022, 3:07 p.m.