Files in dmattek/ARCOS
Automatic Recognition of Collective Signalling
.Rbuildignore
.gitignore
ARCOS-pkg.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/ARCOS.R
R/RcppExports.R
R/arcosTS.R
R/binMeas.R
R/binMeasLISA.R
R/calcFracActInColl.R
R/calcGrowthColl.R
R/calcMoran.R
R/calcNNdists.R
R/calcPvalFromBS.R
R/calcStatsCollEvents.R
R/export2napari.R
R/interpolateTS.R
R/loadDataFromFile.R
R/loadDataFromImages.R
R/meas.R
R/plotBinMeas.R
R/plotNoodle2D.R
R/plotTracks.R
R/randShiftMeas.R
R/runCollVis.R
R/savePlotCollEvents2D.R
R/selCollEvents.R
R/shuffBlockTrack.R
R/shuffCoord.R
R/shuffMeasFrame.R
R/shuffMeasTrack.R
R/trackCollBoot.R
R/trackCollEvents.R
R/trackLen.R
R/utils.R
README.Rmd
README.md
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/ARCOS-basics.html
docs/articles/ARCOS-basics_files/figure-html/unnamed-chunk-12-1.png
docs/articles/ARCOS-basics_files/figure-html/unnamed-chunk-13-1.png
docs/articles/ARCOS-basics_files/figure-html/unnamed-chunk-14-1.png
docs/articles/ARCOS-basics_files/figure-html/unnamed-chunk-3-1.png
docs/articles/ARCOS-basics_files/figure-html/unnamed-chunk-4-1.png
docs/articles/ARCOS-basics_files/figure-html/unnamed-chunk-6-1.png
docs/articles/ARCOS-basics_files/figure-html/unnamed-chunk-7-1.png
docs/articles/ARCOS-basics_files/figure-html/unnamed-chunk-9-1.png
docs/articles/ARCOS-basics_files/header-attrs-2.8/header-attrs.js
docs/articles/ARCOS-basics_files/header-attrs-2.9/header-attrs.js
docs/articles/ARCOS-binTimeseries.html
docs/articles/ARCOS-binTimeseries_files/figure-html/histMeas-1.png
docs/articles/ARCOS-binTimeseries_files/figure-html/idActiveLM2-1.png
docs/articles/ARCOS-binTimeseries_files/figure-html/idActiveNone2-1.png
docs/articles/ARCOS-binTimeseries_files/figure-html/plotActiveRunmed1-1.png
docs/articles/ARCOS-binTimeseries_files/figure-html/plotTrackLen1-1.png
docs/articles/ARCOS-bootstrapping.html
docs/articles/ARCOS-bootstrapping_files/figure-html/idActivePlot-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/noodleColl-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/propColl-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/randIniXYbootVSorigNevents-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/randShiftMeasBootVSorigNevents-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/shuffBlockTrackBootVSorigNevents-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/shuffMeasFrameBootVSorigNevents-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/shuffMeasTrackBootVSorigNevents-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-10-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-11-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-12-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-14-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-16-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-18-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-2-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-20-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-21-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-22-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-24-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-25-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-26-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-27-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-28-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-29-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-30-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-32-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-33-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-36-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-38-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-4-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-40-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-43-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-44-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-47-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-49-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-51-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-54-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-55-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-58-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-6-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-60-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-62-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-7-1.png
docs/articles/ARCOS-bootstrapping_files/figure-html/unnamed-chunk-8-1.png
docs/articles/ARCOS-randomisation.html
docs/articles/ARCOS-randomisation_files/figure-html/idActivePlot-1.png
docs/articles/ARCOS-randomisation_files/figure-html/noodleColl-1.png
docs/articles/ARCOS-randomisation_files/figure-html/propColl-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-10-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-12-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-15-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-18-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-20-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-23-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-25-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-28-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-30-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-32-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-35-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-37-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-40-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-42-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-44-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-47-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-49-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-52-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-54-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-56-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-59-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-61-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-64-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-66-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-68-1.png
docs/articles/ARCOS-randomisation_files/figure-html/unnamed-chunk-7-1.png
docs/articles/ARCOS-synthRand2D.html
docs/articles/ARCOS-synthRand2D_files/figure-html/collOutPlot-1.png
docs/articles/ARCOS-synthRand2D_files/figure-html/collPlot-1.png
docs/articles/ARCOS-synthRasterImages.html
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-11-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-13-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-15-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-17-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-19-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-21-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-23-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-4-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-7-1.png
docs/articles/ARCOS-synthRasterImages_files/figure-html/unnamed-chunk-9-1.png
docs/articles/ARCOS-unitTests.html
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-11-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-12-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-14-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-15-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-17-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-18-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-2-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-20-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-21-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-23-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-24-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-26-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-27-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-29-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-3-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-30-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-32-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-33-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-35-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-36-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-38-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-39-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-41-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-42-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-44-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-45-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-47-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-48-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-5-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-50-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-51-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-53-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-54-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-56-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-57-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-59-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-6-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-60-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-62-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-63-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-65-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-66-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-68-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-69-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-71-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-72-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-74-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-75-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-77-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-78-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-8-1.png
docs/articles/ARCOS-unitTests_files/figure-html/unnamed-chunk-9-1.png
docs/articles/index.html
docs/articles/resources/ARCOS-algoFlow.drawio.png
docs/articles/resources/ARCOS-algorithmOnSingleEvent.png
docs/articles/resources/ARCOS-pipeline.png
docs/articles/resources/README-algFlow.png
docs/articles/resources/README-napari-gui-3D.png
docs/articles/resources/VideoS9_relativeto4D.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ARCOS.html
docs/reference/Rplot001.png
docs/reference/arcosTS.html
docs/reference/binMeas.html
docs/reference/calcFracActInColl.html
docs/reference/calcGrowthColl.html
docs/reference/calcMoran.html
docs/reference/calcNNdists.html
docs/reference/calcPvalFromBS.html
docs/reference/calcStatsColl.html
docs/reference/calcStatsCollEvents.html
docs/reference/calcVecNNdists.html
docs/reference/clipMeas.html
docs/reference/detrendTS-1.png
docs/reference/detrendTS.html
docs/reference/export2napari.html
docs/reference/figures/README-algFlow.png
docs/reference/figures/README-ex1plotColl-1.png
docs/reference/figures/README-ex1plotTS-1.png
docs/reference/figures/README-napari-gui-3D.png
docs/reference/figures/README-unnamed-chunk-3-1.png
docs/reference/figures/README-unnamed-chunk-6-1.png
docs/reference/genRandSynth2D.html
docs/reference/genSynth2D.html
docs/reference/genSynthMultiple2D.html
docs/reference/genSynthSingle2D.html
docs/reference/getMinBBox2D.html
docs/reference/histMeas.html
docs/reference/histTrackLen.html
docs/reference/index.html
docs/reference/interpolMeas.html
docs/reference/interpolateTS-1.png
docs/reference/interpolateTS.html
docs/reference/is.arcosTS.fromBin.html
docs/reference/is.arcosTS.fromBoot.html
docs/reference/is.arcosTS.fromColl.html
docs/reference/is.arcosTS.html
docs/reference/keepSignifDig.html
docs/reference/loadDataFromFile.html
docs/reference/loadDataFromImages.html
docs/reference/midPtCir.html
docs/reference/plotBinMeas.html
docs/reference/plotNoodle2D.html
docs/reference/plotTracks.html
docs/reference/randShiftMeas.html
docs/reference/rcpp_clip.html
docs/reference/runCollVis.html
docs/reference/savePlotColl2D.html
docs/reference/savePlotCollEvents2D.html
docs/reference/selColl.html
docs/reference/selCollEvents.html
docs/reference/selTrackLen.html
docs/reference/shifter.html
docs/reference/shuffBlockTrack.html
docs/reference/shuffBlockVec.html
docs/reference/shuffBlockVecAlt.html
docs/reference/shuffCoord.html
docs/reference/shuffMeasFrame.html
docs/reference/shuffMeasTrack.html
docs/reference/trackColl.html
docs/reference/trackCollBoot.html
docs/reference/trackCollEvents-1.png
docs/reference/trackCollEvents.html
docs/sitemap.xml
inst/shiny-examples/collVisApp/server.R
inst/shiny-examples/collVisApp/ui.R
inst/synthetic2D/Gradient20.csv.gz
inst/synthetic2D/Gradient20.nlogo
inst/synthetic2D/Gradient20_coll.csv.gz
inst/synthetic2D/Gradient20_collStats.csv.gz
inst/synthetic2D/output-randomisation-20/randRes_randShiftMeas_N100.csv.gz
inst/synthetic2D/output-randomisation-20/randRes_shuffBlockTrackAlt_N100.csv.gz
inst/synthetic2D/output-randomisation-20/randRes_shuffIniXY_N100.csv.gz
inst/synthetic2D/output-randomisation-20/randRes_shuffMeasFrame_N100.csv.gz
inst/synthetic2D/output-randomisation-20/randRes_shuffMeasTrack_N100.csv.gz
inst/testImagePatterns/4events/4events.piskel
inst/testImagePatterns/4events/png_32/gray_sprite_00.png
inst/testImagePatterns/4events/png_32/gray_sprite_01.png
inst/testImagePatterns/4events/png_32/gray_sprite_02.png
inst/testImagePatterns/4events/png_32/gray_sprite_03.png
inst/testImagePatterns/4events/png_32/gray_sprite_04.png
inst/testImagePatterns/4events/png_32/gray_sprite_05.png
inst/testImagePatterns/4events/png_32/gray_sprite_06.png
inst/testImagePatterns/4events/png_32/gray_sprite_07.png
inst/testImagePatterns/4events/png_32/gray_sprite_08.png
inst/testImagePatterns/4events/png_32/gray_sprite_09.png
inst/testImagePatterns/4events/png_32/gray_sprite_10.png
inst/testImagePatterns/4events/png_32/gray_sprite_11.png
inst/testImagePatterns/4events/png_32/gray_sprite_12.png
inst/testImagePatterns/4events/png_32/gray_sprite_13.png
inst/testImagePatterns/4events/png_32/gray_sprite_14.png
inst/testImagePatterns/4events/png_32/gray_sprite_15.png
inst/testImagePatterns/4events/png_32/gray_sprite_16.png
inst/testImagePatterns/4events/png_32/gray_sprite_17.png
inst/testImagePatterns/4events/png_32/gray_sprite_18.png
inst/testImagePatterns/4events/png_32/gray_sprite_19.png
inst/testImagePatterns/concentricGrowth/exp05_in.csv.gz
inst/testImagePatterns/concentricGrowth/exp05_out.csv.gz
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame01.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame02.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame03.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame04.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame05.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame06.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame07.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame08.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame09.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame10.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame11.png
inst/testImagePatterns/concentricGrowth/png_64/exp05_frame12.png
inst/testImagePatterns/movingCircle/exp06_in.csv
inst/testImagePatterns/movingCircle/exp06_out.csv
inst/testImagePatterns/movingCircle/png_64/exp06_frame01.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame02.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame03.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame04.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame05.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame06.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame07.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame08.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame09.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame10.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame11.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame12.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame13.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame14.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame15.png
inst/testImagePatterns/movingCircle/png_64/exp06_frame16.png
inst/testImagePatterns/movingMulti/exp08_in.csv.gz
inst/testImagePatterns/movingMulti/exp08_out.csv.gz
inst/testImagePatterns/movingMulti/png_64/exp08_frame01.png
inst/testImagePatterns/movingMulti/png_64/exp08_frame02.png
inst/testImagePatterns/movingMulti/png_64/exp08_frame03.png
inst/testImagePatterns/movingMulti/png_64/exp08_frame04.png
inst/testImagePatterns/movingMulti/png_64/exp08_frame05.png
inst/testImagePatterns/movingMulti/png_64/exp08_frame06.png
inst/testImagePatterns/movingMulti/png_64/exp08_frame07.png
inst/testImagePatterns/movingMulti/png_64/exp08_frame08.png
inst/testImagePatterns/movingMulti/png_64/exp08_frame09.png
inst/testImagePatterns/splitCircle/exp07_in.csv.gz
inst/testImagePatterns/splitCircle/exp07_out.csv.gz
inst/testImagePatterns/splitCircle/png_64/exp07_frame01.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame02.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame03.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame04.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame05.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame06.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame07.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame08.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame09.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame10.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame11.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame12.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame13.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame14.png
inst/testImagePatterns/splitCircle/png_64/exp07_frame15.png
inst/testdata/1central2prev_res.csv
inst/testdata/1central3D_in.csv
inst/testdata/1central3D_res.csv
inst/testdata/1centralGrowing_in.csv
inst/testdata/1centralGrowing_res.csv
inst/testdata/1central_in.csv
inst/testdata/1central_res.csv
inst/testdata/1objSplit_in.csv
inst/testdata/1objSplit_res.csv
inst/testdata/2centralGrowing_in.csv
inst/testdata/2centralGrowing_res.csv
inst/testdata/2clusters1delayed_in.csv
inst/testdata/2clusters1delayed_out.csv
inst/testdata/2clustersCrossing_in.csv
inst/testdata/2clustersCrossing_out.csv
inst/testdata/2clustersMerging_in.csv
inst/testdata/2clustersMerging_out.csv
inst/testdata/2objCrossCommon_in.csv
inst/testdata/2objCrossCommon_res.csv
inst/testdata/2objCross_in.csv
inst/testdata/2objCross_res.csv
inst/testdata/2objMergeSplitCommon_in.csv
inst/testdata/2objMergeSplitCommon_res.csv
inst/testdata/2objMergeSplitCross_in.csv
inst/testdata/2objMergeSplitCross_res.csv
inst/testdata/2objMergeSplitNear_in.csv
inst/testdata/2objMergeSplitNear_res.csv
inst/testdata/2objSplit_in.csv
inst/testdata/2objSplit_res.csv
inst/testdata/2with1commonAsym_in.csv
inst/testdata/2with1commonAsym_res.csv
inst/testdata/2with1commonSym_in.csv
inst/testdata/2with1commonSym_res.csv
inst/testdata/3spreading2prev_res.csv
inst/testdata/3spreading_in.csv
inst/testdata/3spreading_res.csv
inst/testdata/4obj2events_in.csv
inst/testdata/4obj2events_res.csv
inst/testdata/5overlapping2prev_res.csv
inst/testdata/5overlapping_in.csv
inst/testdata/5overlapping_res.csv
inst/testdata/6overlapping_in.csv
inst/testdata/6overlapping_res.csv
inst/testdata/multipleSimulNewObjects_in.csv
inst/testdata/multipleSimulNewObjects_out.csv
inst/testdata/multipleSubseq3NewObjectsAfter2_in.csv
inst/testdata/multipleSubseq3NewObjectsAfter2_out.csv
inst/testdata/multipleSubseq4NewObjectsAfter1_in.csv
inst/testdata/multipleSubseq4NewObjectsAfter1_out.csv
inst/testdata/multipleSubseq4NewObjectsAfter2_in.csv
inst/testdata/multipleSubseq4NewObjectsAfter2_out.csv
inst/testdata/multipleSubseqNewObjects_in.csv
inst/testdata/multipleSubseqNewObjects_out.csv
inst/testdata/sampleTS.csv.gz
man/ARCOS.Rd
man/arcosTS.Rd
man/binMeas.Rd
man/binMeasLISA.Rd
man/calcFracActInColl.Rd
man/calcGrowthColl.Rd
man/calcLisa2D.Rd
man/calcMoran.Rd
man/calcNNdists.Rd
man/calcPvalFromBS.Rd
man/calcStatsColl.Rd
man/calcStatsCollEvents.Rd
man/calcVecNNdists.Rd
man/clipMeas.Rd
man/detrendTS.Rd
man/export2napari.Rd
man/figures/README-ARCOS-logo.png
man/figures/README-algFlow.png
man/figures/README-cellular-dynamics-lab-logo2.png
man/figures/README-ex1plotColl-1.png
man/figures/README-ex1plotTS-1.png
man/figures/README-napari-gui-3D.png
man/genSynthMultiple2D.Rd
man/genSynthSingle2D.Rd
man/getMinBBox2D.Rd
man/histMeas.Rd
man/histTrackLen.Rd
man/interpolMeas.Rd
man/interpolateTS.Rd
man/is.arcosTS.Rd
man/is.arcosTS.fromBin.Rd
man/is.arcosTS.fromBoot.Rd
man/is.arcosTS.fromColl.Rd
man/keepSignifDig.Rd
man/loadDataFromFile.Rd
man/loadDataFromImages.Rd
man/midPtCir.Rd
man/plotBinMeas.Rd
man/plotNoodle2D.Rd
man/plotTracks.Rd
man/randShiftMeas.Rd
man/rcpp_clip.Rd
man/runCollVis.Rd
man/savePlotColl2D.Rd
man/savePlotCollEvents2D.Rd
man/selColl.Rd
man/selCollEvents.Rd
man/selTrackLen.Rd
man/shifter.Rd
man/shuffBlockTrack.Rd
man/shuffBlockVec.Rd
man/shuffBlockVecAlt.Rd
man/shuffCoord.Rd
man/shuffMeasFrame.Rd
man/shuffMeasTrack.Rd
man/trackColl.Rd
man/trackCollBoot.Rd
man/trackCollEvents.Rd
src/ARCOS.so
src/RcppExports.cpp
src/RcppExports.o
src/clamp.cpp
src/clamp.o
tests/testthat.R
tests/testthat/test_calcStatsColl.R
tests/testthat/test_getMinBBox2D.R
tests/testthat/test_interpolateTS.R
tests/testthat/test_keepSignifDig.R
tests/testthat/test_rcpp_clip.R
tests/testthat/test_shifter.R
tests/testthat/test_shuffBlockVec.R
tests/testthat/test_shuffBlockVecAlt.R
tests/testthat/test_trackCollEvents.R
vignettes/.gitignore
vignettes/ARCOS-basics.Rmd
vignettes/ARCOS-binTimeseries.Rmd
vignettes/ARCOS-randomisation.Rmd
vignettes/ARCOS-synthRand2D.Rmd
vignettes/ARCOS-synthRasterImages.Rmd
vignettes/ARCOS-unitTests.Rmd
vignettes/resources/ARCOS-algorithmOnSingleEvent.png
vignettes/resources/ARCOS-pipeline.png
vignettes/resources/README-algFlow.png
vignettes/resources/README-napari-gui-3D.png
vignettes/resources/VideoS9_relativeto4D.png
