plotNoodle2D: "Plot collective events"

In dmattek/ARCOS: Automatic Recognition of Collective Signalling

"Plot collective events"

Description

Noodle/spaghetti plot

Usage

plotNoodle2D(
  objTS,
  xfac = 1,
  yfac = 1,
  tfreq = 1,
  pos = 1L,
  style = c("line", "point", "both"),
  size = 0.25,
  colpal = c("#4E79A7", "#A0CBE8", "#F28E2B", "#FFBE7D", "#59A14F", "#8CD17D", "#B6992D",
    "#F1CE63", "#499894", "#86BCB6", "#E15759", "#FF9D9A", "#79706E", "#BAB0AC",
    "#D37295", "#FABFD2", "#B07AA1", "#D4A6C8", "#9D7660", "#D7B5A6")
)

## S3 method for class 'arcosTS'
plotNoodle2D(
  objTS,
  xfac = 1,
  yfac = 1,
  tfreq = 1,
  pos = 1L,
  style = c("line", "point", "both"),
  size = 0.25,
  colpal = c("#4E79A7", "#A0CBE8", "#F28E2B", "#FFBE7D", "#59A14F", "#8CD17D", "#B6992D",
    "#F1CE63", "#499894", "#86BCB6", "#E15759", "#FF9D9A", "#79706E", "#BAB0AC",
    "#D37295", "#FABFD2", "#B07AA1", "#D4A6C8", "#9D7660", "#D7B5A6")
)

Arguments

objTS	an arcosTS object.
xfac	a numeric, multiplication factor for the x-axis; default 1.
yfac	a numeric, multiplication factor for the y-axis; default 1.
tfreq	a numeric, frequency of the temporal column; default 1.
pos	an integer, index of the coordinate to plot in the position vector; default 1L.
style	one of 'line', 'point', 'both'; determines how collective events are plotted; as lines, points or both. Note that lines can only visualise tracks that span at least 2 frames. Choose 'points' or 'both' for events that consist of many 1-frame tracks.
size	a numeric, determines thickness and size of lines and plots; default 0.25.
colpal	a vector with colours in hex format, default colours from the Tableau 20 palette.

Details

Visualise active objects/cells when they participate in collective events. The plot projects one of the spatial dimensions and time on a 2D space.

Value

a ggplot2 object.

Examples

cat("no examples")

dmattek/ARCOS documentation built on Dec. 5, 2024, 11:02 p.m.