savePlotColl2D: "Save plots of collective events"
In dmattek/ARCOS: Automatic Recognition of Collective Signalling

savePlotColl2D

R Documentation

"Save plots of collective events"

Description

Save plots of collective events

Usage

savePlotColl2D(
  objTS,
  objColl = NULL,
  plotbin = FALSE,
  datanno = NULL,
  outdir = ".",
  filecore = "",
  xlim = c(0, 1024),
  ylim = c(0, 1024),
  plotwh = c(3, 3),
  revy = FALSE,
  stretchf = TRUE,
  ptszmain = 2,
  ptszbin = 1,
  ptszanno = 2,
  ggtheme = NULL,
  imtype = c("png", "pdf"),
  colpal = "RdYlBu"
)

## S3 method for class 'arcosTS'
savePlotColl2D(
  objTS,
  objColl = NULL,
  plotbin = FALSE,
  datanno = NULL,
  outdir = ".",
  filecore = "",
  xlim = c(0, 1024),
  ylim = c(0, 1024),
  plotwh = c(3, 3),
  revy = TRUE,
  stretchf = TRUE,
  ptszmain = 2,
  ptszbin = 1,
  ptszanno = 2,
  ggtheme = NULL,
  imtype = c("png", "pdf"),
  colpal = "RdYlBu"
)

Arguments

`objTS`	an arcosTS object with time series.
`objColl`	an arcosTS object with collective events, defult NULL.
`plotbin`	a boolean, whether dots with binarised measurement should be plotted; default FALSE.
`datanno`	a data.table with T/X/Y annotations overlaid on the plot, default NULL.
`outdir`	a string with the dierctory to save the folder with frames; default ".".
`filecore`	a string with a prefix for output image files, default ".".
`xlim`	a vector with limits for the x-axis, default c(0, 1024).
`ylim`	a vector with limits for the y-axis, default c(0, 1024).
`plotwh`	a vector with width and height of the output image in inches, default c(3,3).
`revy`	logical whether to reverse the y-axis, default TRUE.
`stretchf`	logical whether to stretch the output sequence to include frames without objects, default TRUE.
`ptszmain`	numeric, size of main points in the plot, default 1.
`ptszbin`	numeric, size of points that indicate binarised measurement, default 0.1.
`ptszanno`	numeric, size of points that indicate annotated data, default 2.
`ggtheme`	a ggtheme object with additional style definitions; default NULL.
`imtype`	definition of the output image type, either "png" or "pdf".
`colpal`	colour palette for the main data, default 'RdYlBu'.