Man pages for dmattek/ARCOS
Automatic Recognition of Collective Signalling
| ARCOS | ARCOS: A package for Automatic Recognition of Collective... |
| arcosTS | Create an arcosTS class |
| binMeas | "Smooth, de-trend, and binarise the measurement" |
| binMeasLISA | "Binarise the measurement using LISAs" |
| calcFracActInColl | "Shuffle coordinates" |
| calcGrowthColl | "Calculate collective events' growth" |
| calcLisa2D | Calculate LISA in 2D |
| calcMoran | Global Moran's I spatial correlation |
| calcNNdists | "Calculate NN distances" |
| calcPvalFromBS | Calculate p-value from bootstrapping |
| calcStatsColl | "Stats of collective events" |
| calcStatsCollEvents | Calculate statistics of collective events |
| calcVecNNdists | Calculate a vector of nearest neighbours |
| clipMeas | "Clip the measurement" |
| detrendTS | Smooth and de-trend time series |
| export2napari | "Export data to Napari" |
| genSynthMultiple2D | Random synthetic collective events in 2D |
| genSynthSingle2D | A single synthetic collective event in 2D |
| getMinBBox2D | Rotating callipers algorithm in 2D |
| histMeas | "Plot a histogram of the measurement" |
| histTrackLen | "Plot a histogram of track lengths |
| interpolateTS | Interpolate missing rows in time series |
| interpolMeas | Interpolate NAs and missing data |
| is.arcosTS | "Test whether an object is the arcosTS object" |
| is.arcosTS.fromBin | "Test whether the measurement in the arcosTS object has been... |
| is.arcosTS.fromBoot | "Test whether an arcosTS comes from bootstrapping" |
| is.arcosTS.fromColl | "Test whether an arcosTS object has collective events" |
| keepSignifDig | Keep significant digits |
| loadDataFromFile | Load data from file |
| loadDataFromImages | Title |
| midPtCir | Mid-Point Circle Drawing Algorithm |
| plotBinMeas | "Visualise measurement de-trending and binarisation" |
| plotNoodle2D | "Plot collective events" |
| plotTracks | "Plot tracks" |
| randShiftMeas | "Randomly shift the measurement" |
| rcpp_clip | Clip a numeric vector Clip a numeric vector between lower and... |
| runCollVis | Shiny app to visualise collective events |
| savePlotColl2D | "Save plots of collective events" |
| savePlotCollEvents2D | Save plots of collective events in 2D |
| selColl | Select collective events |
| selCollEvents | Wrapper for filtering collective events |
| selTrackLen | Select track lengths |
| shifter | Vector shifter |
| shuffBlockTrack | "Shuffle blocks of the measurement per track" |
| shuffBlockVec | Block shuffle a binary vector |
| shuffBlockVecAlt | Block shuffle a binary vector |
| shuffCoord | "Shuffle coordinates" |
| shuffMeasFrame | "Shuffle the measurement per frame" |
| shuffMeasTrack | "Shuffle the measurement per track" |
| trackColl | "Track collective events" |
| trackCollBoot | "Track collective events with bootstrapping randomisation" |
| trackCollEvents | Track collective events |
