convert.variants.to.GRanges: convert.variants.to.GRanges
In dmgatti/DOQTL: Genotyping and QTL Mapping in DO Mice
View source: R/convert.variants.to.GRanges.R
convert.variants.to.GRanges R Documentation
convert.variants.to.GRanges
Description
Given a data.frame of SNPs, convert the SNP locations to a GRanges object.
Usage
convert.variants.to.GRanges(variants)
Arguments
variants
Data frame with four header columns and SNPs in the remaining columns.
Details
This function creates a GRanges object from the CHR and POS columns of the SNP data.frame.
Value
GRanges object containing the SNP locations.
Author(s)
Daniel Gatti
Examples
data(example.snps)
gr = convert.variants.to.GRanges(example.snps[1:100,])
dmgatti/DOQTL documentation built on April 7, 2024, 10:35 p.m.
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View source: R/convert.variants.to.GRanges.R
| convert.variants.to.GRanges | R Documentation |
convert.variants.to.GRanges
Description
Given a data.frame of SNPs, convert the SNP locations to a GRanges object.
Usage
convert.variants.to.GRanges(variants)
Arguments
variants |
Data frame with four header columns and SNPs in the remaining columns. |
Details
This function creates a GRanges object from the CHR and POS columns of the SNP data.frame.
Value
GRanges object containing the SNP locations.
Author(s)
Daniel Gatti
Examples
data(example.snps)
gr = convert.variants.to.GRanges(example.snps[1:100,])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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