create.html.page: Create an HTML QTL report

In dmgatti/DOQTL: Genotyping and QTL Mapping in DO Mice

Create an HTML QTL report

Description

Given a DOQTL object, create an HTML page that reports the QTL and creates QTL plots. Permutations for assessing significance thresholds can be supplied.

Usage

  create.html.page(path, qtl, pheno.name, perms, assoc)

Arguments

path	Character string containing the path to which to write the report.
qtl	DOQTL object containing a list with two elemends: lod and coef.
pheno.name	Character string containing the phenotype name.
perms	Numeric vector containing the permutation LOD scores for this phenotype.
assoc	Boolean, if TRUE, look for corresponding *.Rdata files containing the names of the qtl in the current working directory and plot the association plots. If FALSE (default), do not plot association analysis.

Details

The function creates an HTML page with a QTL plot, a table of significant QTL and coefficient plots for the significant loci.

Value

Data.frame with the significant QTL from this phenotype.

Author(s)

Daniel Gatti

See Also

html.report

Examples

  ## Not run:  create.html.page(path, qtl, pheno.name, perms) 

dmgatti/DOQTL documentation built on April 7, 2024, 10:35 p.m.