Man pages for dmontaner/mdgsa
Multi Dimensional Gene Set Analysis.
| annotFilter | Checks and filters an annotation list. |
| annotList2mat | Convert an annotation list into an annotation matrix. |
| annotMat2list | Convert an annotation matrix into an annotation list. |
| getGOnames | Get Gene Ontology names |
| getKEGGnames | Get KEGG names |
| getOntology | Get GO term Ontology |
| goLeaves | Keep just leaf nodes from the Gene Ontology DAG. |
| indexTransform | Transform ranking index distribution. |
| mdGsa | Multi-Dimensional Gene Set Analysis. |
| mdPat | Multi-Dimensional Gene Set Analysis Pattern Classification. |
| plotMdGsa | Plot Multi-Dimensional Gene Set |
| propagateGO | Propagate Gene Ontology annotation. |
| pval2index | Transform p-values in into a ranking index. |
| revList | Revert an annotation list. |
| splitOntologies | Split an annotation list of GO terms by ontologies. |
| transferIndex | Transfer a ranking index from regulatory elements, such as... |
| uvGsa | Uni-Variate Gene Set Analysis. |
| uvPat | Uni-Variate Gene Set Analysis Pattern Classification. |
| uvSignif | Filter significant terms in the univariate gene set analysis. |
