Description Usage Arguments Details Value Author(s) See Also Examples
Plots confidence region for a Gene Set in a two dimensional space.
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index |
matrix or data frame with the two columns of ranking statistics. |
block |
matrix or data frame with gene ids in the first column and gene set ids in the second column. |
cr |
level of the confidence region. |
pch |
plotting character for all genes. |
pch.block |
plotting character for the genes in the gene set or functional block. |
lwd |
line width. Used when drawing ellipses and other lines. |
col.all |
color used to represent all genes. |
col.block |
color used to represent the genes in the gene set being plotted. |
project |
if TRUE projection over the axis are displayed for the genes of the gene set. |
col.proj |
color used to plot the projection. |
diagonals |
if TRUE diagonals are plotted. |
col.diag |
color used to plot the diagonals. |
... |
arguments to be passed to plot |
Black dots show all genes in the dataset. Red stars show the genes in the Gene Set. Blue axis show the "center" of the distribution of all genes; blue ellipse shows the confidence region for all genes. Red axis show the "center" of the distribution of the genes in the Gene Set; red ellipse shows the confidence region for genes in the Gene Set.
A plot.
David Montaner dmontaner@cipf.es
mdGsa
, mdPat
, mdPat
,
ellipsoidPoints
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