propagateGO: Propagate Gene Ontology annotation.

Description Usage Arguments Details Value Author(s) See Also Examples

Description

Genes annotated under a GO term inherit the annotation from all its ancestors.

Usage

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propagateGO(annot, verbose = FALSE)

Arguments

annot

annotation list or matrix.

verbose

verbose

Details

Uses the library GO.db.

Value

A annotation matrix or list with the propagated annotation.

Author(s)

David Montaner dmontaner@cipf.es

See Also

annotMat2list, annotFilter

Examples

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mat <- cbind (c("gene1", "gene2"), c("GO:0034390", "GO:0042889"))
mat
propagateGO (mat)

li <- list ('GO:0034390' = "gene1", 'GO:0042889' = "gene2")
li
propagateGO (li)

dmontaner/mdgsa documentation built on May 15, 2019, 9:35 a.m.